Locus 4983

Sequence ID X_DroMel_CAF1
Location 12,996,224 – 12,996,316
Length 92
Max. P 0.531557
window8121

overview

Window 1

Location 12,996,224 – 12,996,316
Length 92
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 87.19
Mean single sequence MFE -25.15
Consensus MFE -20.98
Energy contribution -21.50
Covariance contribution 0.53
Combinations/Pair 1.05
Mean z-score -1.62
Structure conservation index 0.83
SVM decision value -0.00
SVM RNA-class probability 0.531557
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12996224 92 - 22224390
AUUGAAAUAUCAUGUUUUUA--CAGCUUUGCCAUCAUUGUGACCACCGAUUGCGCCUGCUGGCUGCCCAUAAUUGUGGUCAAAUUGGCUGCUCU
....................--.(((...((((......(((((((.(((((((((....))).))....)))))))))))...)))).))).. ( -25.60)
>DroSec_CAF1 2387 92 - 1
AUUGAAAUAUUAUCUUUGUA--CAGCUUUGCCAUCAUUGUGACCACCGAUUGCGCCUGCUGGCUGCCCAUCAUCGUGGUCAAAGUGGCUGCUCU
....................--.(((...(((((.....(((((((.(((.(((((....))).))..)))...)))))))..))))).))).. ( -27.50)
>DroSim_CAF1 2386 92 - 1
AUUGAAAUAUUAUCUUUGUA--CAGCUUUGCCAUCAUUGUGACCACCGAUUGCGCCUGCUGGCUGCCCAUCAUAGUGGUCAAAGUGGCUGCUCU
....................--.(((...(((((.....(((((((.(((.(((((....))).))..)))...)))))))..))))).))).. ( -27.50)
>DroEre_CAF1 2497 92 - 1
AAAGGAAUAUCAUAUUUGUA--UAGCUUUGCCAUCAUUGUGACCACCGACUGCGCCUGCUGGCUGCCCAUAAUCGUGGUCAAAGUGGCUGCCCU
..(((..(((((....)).)--))((...(((((.....(((((((.((..(((((....))).))......)))))))))..))))).))))) ( -25.90)
>DroYak_CAF1 2457 92 - 1
AAAGAAAUAUCUUGUUUGUA--UAGCUUUGCCAUCAUUGUGACCACCGAUUGCGCCUGCUGGCUGCCCAUAAUCGUGGUCAAAGUGGCUGCCCU
.((((....)))).......--..((...(((((.....(((((((.(((((((((....))).))....)))))))))))..))))).))... ( -28.20)
>DroAna_CAF1 2285 90 - 1
A----UAUAUCCUUUUUUAAACCAGAUUCGCCAUAAUUGUGACCACCGACUGCGCCUGCUGGUUGCCCAUUAUCGUAGUGAAAGUGGCAGCUCU
.----........................(((((....(..((((.((........)).))))..).(((((...)))))...)))))...... ( -16.20)
>consensus
AUUGAAAUAUCAUCUUUGUA__CAGCUUUGCCAUCAUUGUGACCACCGAUUGCGCCUGCUGGCUGCCCAUAAUCGUGGUCAAAGUGGCUGCUCU
........................((...(((((.....(((((((.....(((((....))).))........)))))))..))))).))... (-20.98 = -21.50 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:30 2006