Locus 4982

Sequence ID X_DroMel_CAF1
Location 12,993,958 – 12,994,049
Length 91
Max. P 0.808709
window8120

overview

Window 0

Location 12,993,958 – 12,994,049
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 80.95
Mean single sequence MFE -33.55
Consensus MFE -27.11
Energy contribution -28.62
Covariance contribution 1.51
Combinations/Pair 1.29
Mean z-score -1.64
Structure conservation index 0.81
SVM decision value 0.64
SVM RNA-class probability 0.808709
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12993958 91 - 22224390
AGCAAUUCCAGGGUCACGUCCACGGCCUGAUCCUUGGGAACAUGGGAAUCCGCGGCGGGAUUGGCGCAGUCAUACAAUUGGUCCGUGGUCA
.....(((((((((((.((.....)).)))))).))))).((((((.....(((.((....)).)))..(((......))))))))).... ( -28.00)
>DroGri_CAF1 134 82 - 1
AUCAAAUCGAUGGAUAUAUUCACCAUCGGCUCCUUCG------CUGCAUCCCCGACGG---CGGCGCAUUCGUAGAGUGCCGGCGAGCGCA
.......((((((.........))))))((((((..(------((((..........)---))))((((((...)))))).)).))))... ( -26.40)
>DroSec_CAF1 140 91 - 1
AGCAACUCCAGGGUCACGUCCACAGCCUGAUCCUUGGGAGCAUGGGAAUCCGCGGCGGGAUUGGCGCAGUCAUACAAUCCCGCCGUGGUCA
.....(((((((((((.((.....)).)))))))..)))).....((..((((((((((((((...........)))))))))))))))). ( -42.60)
>DroSim_CAF1 134 91 - 1
AGCAACUCCAGGGUCACGUCCACAGCCUGAUCCUUGGGAGCAUGGGAAUCCGCGGCGGGAUUGGCGCAGUCAUACAAUUCCGCCGUGGUCA
.....(((((((((((.((.....)).)))))))..)))).....((..((((((((((((((...........)))))))))))))))). ( -39.70)
>DroEre_CAF1 134 91 - 1
AGCAACUCCAGGGUCACGUCCACAGCCUGAUCCUUGGGAACAUGGGAAUCCACCGCGGAAUUGGCGCAGUCAUACAAUUCCGCAGUGGUCA
.....(((.(((((((.((.....)).))))))).))).......((..((((.(((((((((...........))))))))).)))))). ( -33.20)
>DroYak_CAF1 134 91 - 1
AGCAACUCCAGGGUCACGUCCACAGCCUGAUCCUUGGGAACAUGCGAAUCCGCCGCGGAAUUGGCGCAGUCAUACAACUCCGCCGUGGUCA
.(((..((((((((((.((.....)).)))))))..)))...)))((..((((.(((((.(((...........))).))))).)))))). ( -31.40)
>consensus
AGCAACUCCAGGGUCACGUCCACAGCCUGAUCCUUGGGAACAUGGGAAUCCGCGGCGGGAUUGGCGCAGUCAUACAAUUCCGCCGUGGUCA
......((((((((((.((.....)).))).))))))).......((..((((((((((((((...........)))))))))))))))). (-27.11 = -28.62 +   1.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:29 2006