Locus 4980

Sequence ID X_DroMel_CAF1
Location 12,993,240 – 12,993,347
Length 107
Max. P 0.651449
window8117

overview

Window 7

Location 12,993,240 – 12,993,347
Length 107
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 73.11
Mean single sequence MFE -37.66
Consensus MFE -26.51
Energy contribution -27.02
Covariance contribution 0.50
Combinations/Pair 1.24
Mean z-score -0.92
Structure conservation index 0.70
SVM decision value 0.25
SVM RNA-class probability 0.651449
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12993240 107 + 22224390
CGGGCGCCGGUGGUGGUGGCUGAUAACGCGACUGCACCGGCGCUUGGCCAGGUGCAAAGCGUUGCGACAUCUUUGCUACGAAGUCCUCCCUUUUUUCCAGCCGUAAA------
.((((((((((.(..((.((.......)).))..)))))))))))(((..((...((((.(..(.(((.((........)).))))..)))))...)).))).....------ ( -40.40)
>DroVir_CAF1 4533 99 + 1
CAGGCGAUUGGGGUGGUGGCUGGUAGCGCGACUGCACUGGCGCUUGGCCAGGCGCAAAGCGUUGCGACAUUUUUAAUUC-------UGCUU----U---GCGUUAAAUAACUU
((((((.(..(.(..((.((.......)).))..).)..)))))))....(((((((((((..................-------)))))----)---)))))......... ( -33.47)
>DroPse_CAF1 9006 91 + 1
CGGGUGACGGCGGCGGCGGUUGGUAGCGCGACUGCACUGGCGCUUGGCCAGGUGCAAAGCGUUGCGACAUUUUCGCUUG------CUAACU----------UGAGAA------
(((((...((((((((..(((.(((((((...(((((((((.....)))).)))))..))))))).).))..)))).))------)).)))----------))....------ ( -39.00)
>DroGri_CAF1 1769 84 + 1
CAGGCGCUUGUGGCGGUGGCUGGUAGCGCGACUGCACCGGCGCUUGGCCAGGCGCAAAGCGUUGCGACAUCUUCACUUC-------UGUUU----------------------
.(((((...((((.((((....(((((((...(((.(((((.....))).)).)))..)))))))..)))).))))...-------)))))---------------------- ( -31.60)
>DroEre_CAF1 1602 107 + 1
CGGGCGCCGGUGGUGGUGGCUGAUAGCGCGACUGCACCGGCGCUUGGCCAGGUGCAAAGCGUUGCGACAUCUUUGCUAGAAGCUCCUCCCUUUUUUCCGGCCGUAAA------
...(((((((.((..(..(((..((((((((((((((((((.....))).))))))....)))))(....)...))))..)))..)..))......)))).)))...------ ( -44.80)
>DroPer_CAF1 3868 91 + 1
CGGGUGACGGCGGCGGCGGUUGGUAGCGCGACUGCACUGGCGCUUGGCCAGGUGCAAAGCGUUGCGACAUUUUCGCUUG------CUAAGU----------UGAGAA------
..(....)((((((((..(((.(((((((...(((((((((.....)))).)))))..))))))).).))..)))).))------))....----------......------ ( -36.70)
>consensus
CGGGCGACGGUGGCGGUGGCUGGUAGCGCGACUGCACCGGCGCUUGGCCAGGUGCAAAGCGUUGCGACAUCUUCGCUUC______CUACCU__________CGUAAA______
........(((((.((((....(((((((...(((((((((.....))).))))))..)))))))..)))).))))).................................... (-26.51 = -27.02 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:27 2006