Locus 4978

Sequence ID X_DroMel_CAF1
Location 12,983,055 – 12,983,151
Length 96
Max. P 0.757518
window8115

overview

Window 5

Location 12,983,055 – 12,983,151
Length 96
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 79.03
Mean single sequence MFE -29.80
Consensus MFE -18.13
Energy contribution -19.29
Covariance contribution 1.16
Combinations/Pair 1.11
Mean z-score -1.87
Structure conservation index 0.61
SVM decision value 0.49
SVM RNA-class probability 0.757518
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12983055 96 - 22224390
UCUUUUGUUCGGCUGGCGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGC--------AUCCAUUAUCCAUUAGCCGCCAUCCACCAUCCAGUGUUUAGC
..........((((((((((....)))).(((.(((((...(((......))).--------..))))).))).))))))((.(..(((......)))..).)) ( -30.90)
>DroSec_CAF1 13736 96 - 1
UCUUUUGUUCGGCUGCCGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGC--------AUCCAUUAUCCAUUAGCCGCCAUCCACCAUCCAGUGUUUAGC
..........((((((((((....)))))(((.(((((...(((......))).--------..))))).)))..)))))((.(..(((......)))..).)) ( -33.60)
>DroSim_CAF1 4824 96 - 1
UCUUUUGUUCGGCUGGCGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGC--------AUCCAUUAUCCAUUAGCCGCCAUCCACCAUCCAGUGUUUAGC
..........((((((((((....)))).(((.(((((...(((......))).--------..))))).))).))))))((.(..(((......)))..).)) ( -30.90)
>DroEre_CAF1 9714 89 - 1
UCUUUUGUUCGGUUGGCGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGCCAACUACGAGCAAUUAUCCACUGUCCAGUGCUUGG---------------
....((((((((((((((((....)))(((...........)))........))))))..))))))).....((((....)))).....--------------- ( -27.30)
>DroYak_CAF1 9904 96 - 1
UCUUUUGUUCGCUUGCCAUGGUGACACGAGGAAAAUGGCAACUCUUACGUGAGC--------AUCCAUUAUCCACUAUCCAGUGUUUAGUGUUAAGUGUACAGC
....((((.((((((.(((...(((((..(((.(((((...(((......))).--------..))))).)))........)))))..))).)))))).)))). ( -26.30)
>consensus
UCUUUUGUUCGGCUGGCGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGC________AUCCAUUAUCCAUUAGCCGCCAUCCACCAUCCAGUGUUUAGC
..........((((((((((....)))).(((.(((((.........(....)...........))))).))).))))))........................ (-18.13 = -19.29 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:25 2006