Locus 4976

Sequence ID X_DroMel_CAF1
Location 12,980,219 – 12,980,331
Length 112
Max. P 0.596664
window8112

overview

Window 2

Location 12,980,219 – 12,980,331
Length 112
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 89.37
Mean single sequence MFE -29.85
Consensus MFE -21.47
Energy contribution -22.34
Covariance contribution 0.88
Combinations/Pair 1.08
Mean z-score -1.70
Structure conservation index 0.72
SVM decision value 0.13
SVM RNA-class probability 0.596664
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12980219 112 + 22224390
CUCAGACUCCUACGGUACGUAAUGCGUAUCCAUAACCUCAGGUGGCAAGUAGGAAGUAAAUCGCUCCAUCUUAUUCAUCAUUUGGCCAACUAUCUGAGCCACUCGAGGUAUC
.............((((((.....))))))....(((((..(((((.((((((((((.....)))...)))))))..(((..(((....)))..))))))))..)))))... ( -32.10)
>DroSec_CAF1 11032 110 + 1
CUCAGACUCCUACGGUACGUAAUGCGUAUCCAUAGCCUCAGGUGGCAAGUAGGAAGUA-AUCGCUCCAUCUUAUUCGUCAUUUAGCCAACUAUCUGAGCCACUCGAG-GAUC
.........(((.((((((.....)))).)).)))((((..(((((.((((((((((.-...)))...)))))))..(((..(((....)))..))))))))..)))-)... ( -31.60)
>DroSim_CAF1 2083 111 + 1
CUCAGACUCCUACGGUACGUAAUGCGUAUCCAUAGCCUCAGGUGGCAAGUAGGAAGUA-AUCGCUCCAUCUUAUUCGUCAUUUGGCCAACUAUCUGAGCCACUCGAGGGAUC
(((.(((((((((((((((.....))))))....(((......)))..))))))(((.-...)))...........)))...((((((......)).))))...)))..... ( -32.20)
>DroEre_CAF1 7106 103 + 1
CUCACACUCAUACGCCACGUAAUACGUAUCCAUAACCUCAGGUGGCAAGUAGGAAGUA-AGCGCCUCAUCUUAU-------UUGGCCAACUAUCUGGCCCACUCGAG-UAUC
.....((((....((((((.....))).......(((...))))))((((((((.(..-.......).))))))-------))(((((......))))).....)))-)... ( -23.50)
>consensus
CUCAGACUCCUACGGUACGUAAUGCGUAUCCAUAACCUCAGGUGGCAAGUAGGAAGUA_AUCGCUCCAUCUUAUUCGUCAUUUGGCCAACUAUCUGAGCCACUCGAG_GAUC
.............((((((.....)))))).....((((..(((((...((((.(((.....(((..................)))..))).)))).)))))..)))).... (-21.47 = -22.34 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:22 2006