| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,976,335 – 12,976,429 |
| Length | 94 |
| Max. P | 0.554326 |
| Location | 12,976,335 – 12,976,429 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 71.64 |
| Mean single sequence MFE | -24.26 |
| Consensus MFE | -8.56 |
| Energy contribution | -9.04 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554326 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12976335 94 + 22224390 --ACAUUUUUCGCCGUUUCGGUGUUUUUCUGUCUAUAUUUUUCUGUGGCCAAUGCAA--UAGCAAAUGCAAUAGUUU-GGUGGCAGGUAC--GCUUGGCUG --.........((((....(((((...((((.((((......((((.((...(((..--..)))...)).))))...-.)))))))).))--))))))).. ( -23.40) >DroSec_CAF1 7251 94 + 1 --ACAUUUUUCGCUGUUUCGGUGCUUUUCAGUCUAUAUUUUUCUGUGGCCAAUGCAA--UUGCAAGUGCAAUAGUUU-GGUGGCAGGUAC--GCUUGGCUG --........(((((...))))).....(((((........(((((.(((((.((.(--((((....))))).))))-))).)))))...--....))))) ( -27.06) >DroEre_CAF1 3188 86 + 1 --ACAUUUUUCGCUA-----GUGUU-UUCUGUCUAUU--UCGCUAUGGCCAUUGCAA--UUGCAAAUGCAAUAGUUU-GGUGGCAGGUAC--GCUUGGCUG --.........((((-----((((.-.((((.(((((--..(((((.((..((((..--..))))..)).)))))..-))))))))).))--)).)))).. ( -27.30) >DroYak_CAF1 2940 90 + 1 --ACAUUUAUCGCUA-----GUGUUUUUCUAUCUAUA--UUCGUGUGGCCAAUGCAA--UUGCAAAUGCAAUAGUUUCGGUGGCAUGUACUCGCUUGGCUG --.........((((-----(((..............--..(((((.(((...((.(--((((....))))).))...))).)))))....))).)))).. ( -22.05) >DroAna_CAF1 2835 81 + 1 AUAUAUUUUUUUCUGUCU---------UGUGGCUGAG--UUUC------AGCUGCAAUGUUGCAUUUGCAAUUCUUU-GGCGGCAGCUAC--GGUCGAGUG ............((((((---------((..((((..--...)------)))..))).(((((....))))).....-)))))(.((...--.)).).... ( -21.50) >consensus __ACAUUUUUCGCUGU_U__GUGUUUUUCUGUCUAUA__UUUCUGUGGCCAAUGCAA__UUGCAAAUGCAAUAGUUU_GGUGGCAGGUAC__GCUUGGCUG ...........((((...........................((((.(((...((....((((....))))..))...))).))))((....)).)))).. ( -8.56 = -9.04 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:20 2006