Locus 4973

Sequence ID X_DroMel_CAF1
Location 12,975,449 – 12,975,546
Length 97
Max. P 0.748724
window8109

overview

Window 9

Location 12,975,449 – 12,975,546
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 82.13
Mean single sequence MFE -29.40
Consensus MFE -20.42
Energy contribution -20.87
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.96
Structure conservation index 0.69
SVM decision value 0.47
SVM RNA-class probability 0.748724
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12975449 97 + 22224390
AUGAAUGGCCGUAAAAGAAAAUGCAUUUUCCCGCCAUGCGGAAGUGUUUUCCCUCUCGGCUUGGGCUUUUUACUCUUUCGGGGAGAAAGGCCAAAGC
......(((((.....((((..((((((..((((...)))))))))))))).....)))))..((((((((.(((.....))).))))))))..... ( -30.10)
>DroSec_CAF1 6398 97 + 1
AUGAAUGGCCGUUAAAGAAAAUGCAUUUUCCCGCCAUGCGGAAGUGUUUUCCCUCUCGGUCUGGGCUUUUUAGUCAUUCGGGGAGAAAGGCCAAAGC
.....(((((......((((..((((((..((((...)))))))))))))).(((((.(....((((....))))...).)))))...))))).... ( -30.30)
>DroYak_CAF1 2008 80 + 1
AUGAAUGGCCGUAAAAGAAAAUGCAUUUUCCGGCCAUGCGGAAGUGUUUUCACUU-----------------CUCUUACGGGGAGAAAGGCCAAGGC
.....(((((......((((((((...(((((......))))))))))))).(((-----------------(((....))))))...))))).... ( -27.80)
>consensus
AUGAAUGGCCGUAAAAGAAAAUGCAUUUUCCCGCCAUGCGGAAGUGUUUUCCCUCUCGG__UGGGCUUUUUACUCUUUCGGGGAGAAAGGCCAAAGC
.....(((((......((((((((...((((.((...)))))))))))))).(((((.......................)))))...))))).... (-20.42 = -20.87 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:20 2006