Locus 497

Sequence ID X_DroMel_CAF1
Location 1,426,024 – 1,426,114
Length 90
Max. P 0.763857
window767 window768

overview

Window 7

Location 1,426,024 – 1,426,114
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 90.37
Mean single sequence MFE -32.93
Consensus MFE -26.55
Energy contribution -28.17
Covariance contribution 1.61
Combinations/Pair 1.04
Mean z-score -2.43
Structure conservation index 0.81
SVM decision value 0.51
SVM RNA-class probability 0.763857
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1426024 90 + 22224390
GCGAGCCAAAUAAGGCAAAUAGACAGCAGCAGCAGAGCGCCGGCCAAAUUGCUGCACUUGUGCUGUGCUGUCGGCCAGUCGCGUUUACGU
(((((((......))).....(((((((.((((((((.((.(((......))))).))).))))))))))))......))))........ ( -37.30)
>DroSec_CAF1 30746 90 + 1
GCGAGCCAAAUAAGGCAAAUAGACAGCAGCAGCAGAGCGCCGGCCAAAUUGCUGCAUUUGUGCUGUGCUGUCGGCCAGUCGCGUUAACGU
(((((((......))).....(((((((.(((((.((...((((......))))...)).))))))))))))......))))........ ( -35.40)
>DroEre_CAF1 25964 82 + 1
GCGAACCAAAUAAGCCAAAUAGACAGC---AGCAGAGCGCCGGCCAAAUUGCUGCACUUCUG-----CUGUCGGCCAGUCGCGUUAACGU
((((.........(((.....((((((---((..(((.((.(((......))))).))))))-----))))))))...))))........ ( -26.10)
>consensus
GCGAGCCAAAUAAGGCAAAUAGACAGCAGCAGCAGAGCGCCGGCCAAAUUGCUGCACUUGUGCUGUGCUGUCGGCCAGUCGCGUUAACGU
(((((((......))).....(((((((.((((((((.((.(((......))))).))).))))))))))))......))))........ (-26.55 = -28.17 +   1.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 1,426,024 – 1,426,114
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 90.37
Mean single sequence MFE -32.30
Consensus MFE -24.39
Energy contribution -26.00
Covariance contribution 1.61
Combinations/Pair 1.04
Mean z-score -2.12
Structure conservation index 0.76
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1426024 90 - 22224390
ACGUAAACGCGACUGGCCGACAGCACAGCACAAGUGCAGCAAUUUGGCCGGCGCUCUGCUGCUGCUGUCUAUUUGCCUUAUUUGGCUCGC
........((((......((((((((((((..(((((.((......))..))))).))))).))))))).....(((......))))))) ( -35.90)
>DroSec_CAF1 30746 90 - 1
ACGUUAACGCGACUGGCCGACAGCACAGCACAAAUGCAGCAAUUUGGCCGGCGCUCUGCUGCUGCUGUCUAUUUGCCUUAUUUGGCUCGC
........((((......((((((((((((....(((.((......))..)))...))))).))))))).....(((......))))))) ( -30.90)
>DroEre_CAF1 25964 82 - 1
ACGUUAACGCGACUGGCCGACAG-----CAGAAGUGCAGCAAUUUGGCCGGCGCUCUGCU---GCUGUCUAUUUGGCUUAUUUGGUUCGC
........(((((((((((((((-----(((.(((((.((......))..)))))...))---)))))).....)))).....)).)))) ( -30.10)
>consensus
ACGUUAACGCGACUGGCCGACAGCACAGCACAAGUGCAGCAAUUUGGCCGGCGCUCUGCUGCUGCUGUCUAUUUGCCUUAUUUGGCUCGC
........((((......((((((((((((..(((((.((......))..))))).))))).))))))).....(((......))))))) (-24.39 = -26.00 +   1.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:02 2006