Locus 4969

Sequence ID X_DroMel_CAF1
Location 12,970,501 – 12,970,611
Length 110
Max. P 0.524682
window8102

overview

Window 2

Location 12,970,501 – 12,970,611
Length 110
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 90.91
Mean single sequence MFE -24.40
Consensus MFE -17.79
Energy contribution -19.30
Covariance contribution 1.51
Combinations/Pair 1.11
Mean z-score -2.39
Structure conservation index 0.73
SVM decision value -0.02
SVM RNA-class probability 0.524682
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12970501 110 + 22224390
AUUGACAAAGCAAUUGGAUCAUAAAUAAUUUAUUAAUUAAGAUGUUUCCGAUAGAAAUCGCUUAACACUGAACAUGACCCAAUUCCAAUGUUUCGCAGGGGAAACUCAAC
...((((..(.((((((.((((...(((((....)))))((.((((..((((....))))...))))))....)))).)))))).)..)))).....(((....)))... ( -21.00)
>DroSim_CAF1 4835 110 + 1
AUUGACAAAGGAAUUGGAUCAUAAAUAAUUUAUUAAUUAAGAUGUUUCCGAUGGAAAUCGCUAAACACUGAACAUGACCCAAUUCCAAUGAUUCGCAGGGGAAACUCAAC
.........((((((((.((((...(((((....)))))((.(((((.((((....))))..)))))))....)))).))))))))...........(((....)))... ( -28.90)
>DroYak_CAF1 5054 110 + 1
AUUGACAAAGGAAUGGGAUCAUAAAUUAUUUAUUAAUUAAGAUGCUUUCGAUAGAAAUCGCUAGACACUCAACAUGACCCAAUUUCAAUGUUUCACAGCGGAAGCUCAGC
...((((..((((((((.((((.(((((.....)))))..((((((..((((....))))..)).)).))...))))))).)))))..))))....(((....))).... ( -23.30)
>consensus
AUUGACAAAGGAAUUGGAUCAUAAAUAAUUUAUUAAUUAAGAUGUUUCCGAUAGAAAUCGCUAAACACUGAACAUGACCCAAUUCCAAUGUUUCGCAGGGGAAACUCAAC
.((((....((((((((.((((...(((((....)))))((.((((..((((....))))...))))))....)))).))))))))...(((((......))))))))). (-17.79 = -19.30 +   1.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:14 2006