| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,952,639 – 12,952,759 |
| Length | 120 |
| Max. P | 0.605834 |
| Location | 12,952,639 – 12,952,759 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.67 |
| Mean single sequence MFE | -22.93 |
| Consensus MFE | -17.71 |
| Energy contribution | -17.60 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.605834 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12952639 120 + 22224390 AUAUAGUGGCCAUUGAAAUCGCACGAAAUCGGCGGCCAAGUCGUUCCCCAAUGGAAUCACUUUCACUUUGCUCACCUACAGGGCCACCACUCCAAAAAAAAACCAAAAAAAAAACUCCGC .....((((((.(((...((((.((....))))))..((((.(((((.....))))).))))................)))))))))................................. ( -25.90) >DroEre_CAF1 10223 103 + 1 AUACAGUGGCCAUUGAAAUCGCACGAAAUCGGCGGCCAAGUCGGUCCCC-AUGGAAUCACUUUCACUUUGCUCACCUACAGGGUCGCCUCUCCAAAAA----------------CUCCGC .....((((.....((..((....))..))(((((((..((.(((...(-(..(((.....)))....))...))).))..)))))))..........----------------..)))) ( -23.90) >DroYak_CAF1 10685 108 + 1 AUACACUGGCCAUUGAAAUCGCACGAAAUCGGCGGCCA------------AUGGAAUCACUUUCACUUUGCUCACCUACAGGGCCGCCUCUCCAAAAAAAAAUACAAAAAAAAUCACCGC ......(((.....((..((....))..))(((((((.------------.(((((....)))))..(((........))))))))))...))).......................... ( -19.00) >consensus AUACAGUGGCCAUUGAAAUCGCACGAAAUCGGCGGCCAAGUCG_UCCCC_AUGGAAUCACUUUCACUUUGCUCACCUACAGGGCCGCCUCUCCAAAAAAAAA___AAAAAAAA_CUCCGC .....((((((.(((...((((.((....))))))................(((((....))))).............)))))))))................................. (-17.71 = -17.60 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:56 2006