| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,951,376 – 12,951,490 |
| Length | 114 |
| Max. P | 0.513408 |
| Location | 12,951,376 – 12,951,490 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 86.67 |
| Mean single sequence MFE | -29.40 |
| Consensus MFE | -21.20 |
| Energy contribution | -22.87 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12951376 114 + 22224390 AUGAUGAUCAUUGCCAGCUAUCGUUGU-UAGCAUCU-CGGGUGCCAUUAGCCGCUAUCAGCGAUGAAAACUGUUAGAAAUUUCGAGAGCAAUUUCAUCGCUCAUCAUUAUUUCACU (((((((....((..(((....((((.-..((((..-...))))...)))).)))..))(((((((((..((((.((....))...)))).))))))))))))))))......... ( -28.80) >DroEre_CAF1 8960 108 + 1 AUGACGAUCAGUGCCU-UUAUCGUUGUGCAGCAUCU-UGGGUCCCAUUAGUCGCUAUCAGCGAUGAAAACUGUUAGAAAUUUCGAGAGCAAUUUCAGCGCUCAC------UUCGAU ....(((..(((((.(-(((((((((...(((..((-..(....)...))..)))..))))))))))........((((((.(....).)))))).)))))...------.))).. ( -30.20) >DroYak_CAF1 9346 114 + 1 AUGAUGAUCAUUGCCA-UUAUCGUUGU-CAGCAUCUCUGGUUCCCAUUAGUCGCUAUCAGCGAUGAAAACUGUUAGAAAUUUCGAGAGCAAUUUCAUCGCUCAUCAUUUUUUCAGU (((((((.(.......-(((((((((.-.(((..((.(((...)))..))..)))..))))))))).........((((((.(....).))))))...).)))))))......... ( -29.20) >consensus AUGAUGAUCAUUGCCA_UUAUCGUUGU_CAGCAUCU_UGGGUCCCAUUAGUCGCUAUCAGCGAUGAAAACUGUUAGAAAUUUCGAGAGCAAUUUCAUCGCUCAUCAUU_UUUCAAU .((((((.(........(((((((((...(((..((...(....)...))..)))..))))))))).........((((((.(....).))))))...).)))))).......... (-21.20 = -22.87 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:56 2006