| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,949,944 – 12,950,056 |
| Length | 112 |
| Max. P | 0.944388 |
| Location | 12,949,944 – 12,950,056 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.38 |
| Mean single sequence MFE | -30.00 |
| Consensus MFE | -20.01 |
| Energy contribution | -20.70 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.944388 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12949944 112 + 22224390 UUCAGGGGUCACAGCUUUGGCAAAGAU-UAAAACUUUUAUGGUAGAUGAUAUAUGCAAUUAGCU--AGUU-----CCAGUCACAAAAUGUGCGCAAAAUGCAGAUGAAUGUGGCUUUUGA .(((((((((((((((...(((...((-((..(((.....)))...))))...)))....))))--.(((-----(..(.(((.....))))((.....))....))))))))))))))) ( -27.20) >DroSec_CAF1 8171 114 + 1 UUCAGAGGUCACAGCUUCUGCAAAGAUUUAAAACUUUUAUGGUAGCAGAUAUAUAAAAUUAGCUUAGGUU-----UCUAUCACAAAAUGCGCGCAAAAUGCAGAUGAUUGUGGCU-UUGA ....(((((((((((.((((((............((((.((((((.((((...(((.......))).)))-----))))))).))))((....))...)))))).).))))))))-)).. ( -27.10) >DroEre_CAF1 7514 112 + 1 UUCAGAGGUCACAGCUUCUGCAAAGACUAACAAGUUUUAUGGU-AACGAUAUUUGAAAUAAGGU--GGUUU----UUUAUCACAAAAUGUGUUCGAAAUGCAGAUGCCUGUGGCU-UUGA ....(((((((((((.((((((((((((....)))))).....-.......((((((.....((--(((..----...)))))........)))))).)))))).).))))))))-)).. ( -33.22) >DroYak_CAF1 7777 117 + 1 UUCAGAGGUCACAGCUUCUGCAAAGACUAAAUAGUUUUAUGGAAAACGAUAUAUAAAAUGAGCU--GGUUUUGCUUUAAUCACAAAAUGUGCGCAAAAUGCAGAUGUCUGUGGCU-UUGA ....(((((((((((.(((((((((((((....((((((((..........))))))))....)--))))))........(((.....))).......)))))).).))))))))-)).. ( -32.50) >consensus UUCAGAGGUCACAGCUUCUGCAAAGACUAAAAACUUUUAUGGUAAACGAUAUAUAAAAUUAGCU__GGUU_____UCAAUCACAAAAUGUGCGCAAAAUGCAGAUGACUGUGGCU_UUGA .((((.(((((((((.((((((............(((((((..........)))))))......................(((.....))).......)))))).).)))))))).)))) (-20.01 = -20.70 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:53 2006