| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,423,545 – 1,423,654 |
| Length | 109 |
| Max. P | 0.516471 |
| Location | 1,423,545 – 1,423,654 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 72.62 |
| Mean single sequence MFE | -32.10 |
| Consensus MFE | -17.09 |
| Energy contribution | -18.21 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.53 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516471 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1423545 109 - 22224390 AGCAAGUGCCUAGAUGCAUGACGAUACAUAUGUACAUGUCCGUCUAGGUGGACAGAUCGCAGGCAUUUCUCCUGCACUCUUCCAUGCCAGCCAGUCUUCCCG-AGGAAAG .(((...(((((((((...((((.(((....)))..)))))))))))))(((.(((..(((((.......)))))..)))))).))).........((((..-.)))).. ( -32.00) >DroSec_CAF1 30006 105 - 1 AGCAAGUGCCUAGAAACAUGA----ACAUACGUACAUGUCCGUCUAGGUGGACAGAUCGCAGGCAUUCCUCCUGCACUCUUCCAUGCCAGCCAGUCUUCCCG-AGGAAGA .(((...(((((((.(((((.----((....)).)))))...)))))))(((.(((..(((((.......)))))..)))))).))).......((((((..-.)))))) ( -35.60) >DroEre_CAF1 25198 88 - 1 UGCAAGUGUCUGGAUGC----------------ACAAAUCCGUCUAGGCGAACAGAUCGCAGGCAUUCCUCCUGCACUCGCAGUU------GUGUCUUCCAGCAGCAAAG (((...((.(((((.((----------------((((....((((..((((.....)))))))).......((((....))))))------))))..))))))))))... ( -28.70) >consensus AGCAAGUGCCUAGAUGCAUGA____ACAUA_GUACAUGUCCGUCUAGGUGGACAGAUCGCAGGCAUUCCUCCUGCACUCUUCCAUGCCAGCCAGUCUUCCCG_AGGAAAG ....((((((((((((((((..............)))))..)))))))).........(((((.......))))))))..................((((....)))).. (-17.09 = -18.21 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:57 2006