Locus 4949

Sequence ID X_DroMel_CAF1
Location 12,924,355 – 12,924,462
Length 107
Max. P 0.667896
window8067

overview

Window 7

Location 12,924,355 – 12,924,462
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 87.01
Mean single sequence MFE -27.64
Consensus MFE -19.34
Energy contribution -19.10
Covariance contribution -0.24
Combinations/Pair 1.12
Mean z-score -1.95
Structure conservation index 0.70
SVM decision value 0.28
SVM RNA-class probability 0.667896
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12924355 107 + 22224390
CAUCGAUGCAUCAGCCAUCGAUGGUUCUUCGCCGAUAAUUCUUAAUAUCUUUUUUCGUGCCUAUCGAUGGUUUGCAAAACAUCGGCACCUCAGAAACAGUUUUCGAA
..((((((((..((((((((((((......(((((...................))).)))))))))))))))))).......(....).............)))). ( -24.91)
>DroSec_CAF1 1055 107 + 1
CAUCGAUGCAUCAGCCAUCAAUGGUUCUUCGUCGAUAAUUCUCAAUAUCUGUUUUGGUGCCUAUCGAUGGUUAGCAAAACAUCGGCACCUCAGAAAUAGUUUUGGAA
.(((((((.(..(((((....)))))..))))))))..(((.(((...(((((((((((((....((((..........))))))))))...)))))))..)))))) ( -31.80)
>DroSim_CAF1 1085 107 + 1
CAUCGAUGCAUCAGCCAUCGAUGGUUCUUCGCCGAUAAUUCUCAAUAUCUGUUUUGGCGCCUAUCGAUGGUUAGCAAAACAUCGGCACCUCAGAAAUAGUUUUGGAA
..((((((....((((((((((((.....((((((..................)))))).)))))))))))).......))))))....((((((....)))))).. ( -29.27)
>DroEre_CAF1 1040 107 + 1
CAUCGAUGCAUCAGCCAUCGAUGGUCUUCUGCCGAUAUUUGUCGAUAUCUGUUUUGGUGCCUAUCGAUGCUUUGCAAAACAUCGGUUCGUUAGAAAACGUUUUUGAA
......((((..(((.(((((((((((...((.((((((....)))))).))...)).))).))))))))).)))).....((((..((((....))))...)))). ( -27.60)
>DroYak_CAF1 1062 107 + 1
CAUCGAUGCAUCUGCCAUCGAUGGUUCUUUGUCGAUAUUUCUCGAUAUCUGUUUUGGUGUCUAUCGAUGUUUUGCAAAUCAUCGGCUCCUUUAACAACGUUUUUGAA
..((((((.((.((((((((((((..((.((((((......))))))........))...)))))))))....))).))))))))...................... ( -24.60)
>consensus
CAUCGAUGCAUCAGCCAUCGAUGGUUCUUCGCCGAUAAUUCUCAAUAUCUGUUUUGGUGCCUAUCGAUGGUUUGCAAAACAUCGGCACCUCAGAAAAAGUUUUGGAA
(((((((((....).)))))))).......(((((((..(..(((........)))..)..))))((((..........)))))))..................... (-19.34 = -19.10 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:43 2006