Locus 4948

Sequence ID	X_DroMel_CAF1
Location	12,924,006 – 12,924,099
Length	93
Max. P	0.884816

overview

Window 6

Location	12,924,006 – 12,924,099
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	94.52
Mean single sequence MFE	-21.96
Consensus MFE	-17.72
Energy contribution	-18.12
Covariance contribution	0.40
Combinations/Pair	1.00
Mean z-score	-1.89
Structure conservation index	0.81
SVM decision value	0.93
SVM RNA-class probability	0.884816
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12924006 93 + 22224390
GUUGUUUGCCAAGGGGGGGCACAAAAACAAAAUCGAAAAAAGGAAAACACAGUCACUGUGCAUUAGAGAGAGACAUCCUCACCCCCACACACG
............(((((.(((((...((.......................))...)))))....(((.((....))))).)))))....... ( -20.50)
>DroSec_CAF1 706 92 + 1
GUUGUUUGCCAAGGG-GGGCACAAAAACAAAAUCGAAAAAAGGAAAACACAGUCACUGUGCAUUAGAGAGAGACAUCCUCACCCCCACACACG
............(((-(((((((...((.......................))...)))))....(((.((....))))).)))))....... ( -20.50)
>DroSim_CAF1 735 93 + 1
GUUGUUUGCCAAGGGGGGGCACAAAAACAAAAUCGAAAAAAGGAAAACACAGUCACUGUGCAUUAGAGAGAGACAUCCUCACCCCCACACACG
............(((((.(((((...((.......................))...)))))....(((.((....))))).)))))....... ( -20.50)
>DroEre_CAF1 691 91 + 1
GUUGUUUGUCGGGGGG--GCACAAAAACAAAAUCGAAAAAAGGAAAACACAGUCACUGUGCAUUAGAGAGAGACAUCCUCACCCCCACACACA
..(((.(((.(((((.--(((((...((.......................))...)))))....(((.((....))))).)))))))).))) ( -23.50)
>DroYak_CAF1 705 93 + 1
UUUGUUUGUCGGGGGGGAGCACAAAAACGAAAUCGAAAAAAGGAAAACACAGUCACUGUGCAUUAGAGAGAGACAUCCUCACCCCCACACAAA
....(((((..(((((..(((((....((....)).......((........))..)))))....(((.((....))))).)))))..))))) ( -24.80)
>consensus
GUUGUUUGCCAAGGGGGGGCACAAAAACAAAAUCGAAAAAAGGAAAACACAGUCACUGUGCAUUAGAGAGAGACAUCCUCACCCCCACACACG
............(((((.(((((...((.......................))...)))))....(((.((....))))).)))))....... (-17.72 = -18.12 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:42 2006