Locus 4943

Sequence ID X_DroMel_CAF1
Location 12,901,950 – 12,902,054
Length 104
Max. P 0.598483
window8061

overview

Window 1

Location 12,901,950 – 12,902,054
Length 104
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 79.59
Mean single sequence MFE -26.28
Consensus MFE -20.77
Energy contribution -21.47
Covariance contribution 0.70
Combinations/Pair 1.12
Mean z-score -1.07
Structure conservation index 0.79
SVM decision value 0.13
SVM RNA-class probability 0.598483
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12901950 104 + 22224390
AUAUUUAAUAUACAUUGCA--AUAACCCAUUGCAGAUGAGUUCUGCGAGGAGUAUCCGCACAAUCUGAUGCCCACUCCCGGCUACUGGAUCGAAUGCUCCCGCCAG
............(((((((--((.....)))))).)))......(((.(((((((.((....(((((..(((.......)))...))))))).))))))))))... ( -26.60)
>DroSim_CAF1 86611 102 + 1
--AUAUAAUAUACAUUGCA--AUAACCCAUUGCAGAUGAGUUCUGCGAGGAGUAUCCGCACAAUCUGAUGCCCACUCCCGGCUACUGGAUCGAGUGCUCCCGCCAG
--..........(((((((--((.....)))))).)))......(((.((((((..((....(((((..(((.......)))...)))))))..)))))))))... ( -27.20)
>DroEre_CAF1 99435 88 + 1
--------UAUA----------AAAUGCAUUGCAGAUGAGUUCUGCGAGGAGUAUCCGCACAAUCUGAUGCCCACGCCGGGUUACUGGAUCGAGUGCUCCCGCCAG
--------....----------....((.(((((((.....)))))))((((((..((....(((((..((((.....))))...)))))))..)))))).))... ( -28.90)
>DroYak_CAF1 112488 88 + 1
--------UAUA----------AAAUGCAUUGCAGAUGAGUUCUGCGAGGAGUAUCCGCACAAUCUGAUGCCCACGCCGGGCUACUGGAUCGAGUGCUCCCGCCAG
--------....----------....((.(((((((.....)))))))((((((..((....(((((..((((.....))))...)))))))..)))))).))... ( -30.50)
>DroAna_CAF1 117526 100 + 1
--AAA-GAAAAACAUUACU--A-AUCAAAUUUCAGAUGAGUUCUGUGAGGAGUAUCCACACAAUCUCAUGCCCACGCCGGGCUACUGGAUCGAGUGCUCCAGGCAG
--...-.............--.-.......((((((((((...((((.((.....)).))))..)))))((((.....))))..))))).....(((.....))). ( -25.40)
>DroPer_CAF1 162442 94 + 1
-----------AC-CUUCAAUAUCAUCCAUUCCAGAUGAGUUCUGCGAGGAGUAUCCACAUAACCUAAUGCCCACGCCCGGCUACUGGAUCGAAUGCUCGCGCCAG
-----------..-........(((((.......)))))(((..(((.((.((((............)))))).)))..)))..((((..(((....)))..)))) ( -19.10)
>consensus
________UAUAC_UU_CA__AUAACCCAUUGCAGAUGAGUUCUGCGAGGAGUAUCCGCACAAUCUGAUGCCCACGCCCGGCUACUGGAUCGAGUGCUCCCGCCAG
.............................(((((((.....)))))))(((((((.((....(((((..(((.......)))...))))))).)))))))...... (-20.77 = -21.47 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:37 2006