Locus 494

Sequence ID X_DroMel_CAF1
Location 1,423,164 – 1,423,268
Length 104
Max. P 0.842784
window761

overview

Window 1

Location 1,423,164 – 1,423,268
Length 104
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 93.95
Mean single sequence MFE -39.20
Consensus MFE -31.99
Energy contribution -34.80
Covariance contribution 2.81
Combinations/Pair 1.04
Mean z-score -2.27
Structure conservation index 0.82
SVM decision value 0.76
SVM RNA-class probability 0.842784
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1423164 104 + 22224390
CAGUGGCAUUGUUGAGCAAUUUGCGCACAGCUUUCUAUGGCAAUGGCAUAAUGGCAA------UGGCAGUGCAAGUAGCUCGGCAUGG-GGCAGUAUCUACGGAUGCGGGG
...((.(..((((((((.((((((((...(((......)))..((.(((.......)------)).)))))))))).))))))))...-).))(((((....))))).... ( -39.40)
>DroSec_CAF1 29581 104 + 1
CACUGGCAUUGUUGAGCAAUUUGCGCACAGCUUUCUAUGGCAAUGGCAUAAUGGCAA------UGGCAGUGCAAGUAGCUCGGCAUGG-GGCAGUAUCUACGGAUGCGGGG
...((.(..((((((((.((((((((...(((......)))..((.(((.......)------)).)))))))))).))))))))...-).))(((((....))))).... ( -39.30)
>DroSim_CAF1 22631 104 + 1
CACUGGCAUUGUUGAGCAAUUUGCGCACAGCUUUCUAUGGCAAUGGCAUAAUGGCAA------UGGCAGUGCAAGUAGCUCGGCAUGG-GGCAGUAUCUACGGAUGCGGGG
...((.(..((((((((.((((((((...(((......)))..((.(((.......)------)).)))))))))).))))))))...-).))(((((....))))).... ( -39.30)
>DroEre_CAF1 24800 111 + 1
CACUGGCUUUGCUGAGCAAUUUGCGCACAGCUUUCUAUGGCAAUGGCAUAAUGGCAAUGGCAAUGGCAAUGCAAGUAGCUCGGCAUGGGGGCAGUAUCUACGGAUGGGGAG
.((((.(((((((((((.(((((((....(((......)))..((.(((....((....)).))).)).))))))).))))))))..))).))))(((....)))...... ( -38.80)
>consensus
CACUGGCAUUGUUGAGCAAUUUGCGCACAGCUUUCUAUGGCAAUGGCAUAAUGGCAA______UGGCAGUGCAAGUAGCUCGGCAUGG_GGCAGUAUCUACGGAUGCGGGG
.....((..((((((((.((((((((...(((......)))....((......)).............)))))))).)))))))).....)).(((((....))))).... (-31.99 = -34.80 +   2.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:56 2006