Locus 4939

Sequence ID X_DroMel_CAF1
Location 12,879,679 – 12,879,769
Length 90
Max. P 0.532225
window8054

overview

Window 4

Location 12,879,679 – 12,879,769
Length 90
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 91.43
Mean single sequence MFE -27.97
Consensus MFE -23.30
Energy contribution -23.30
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -1.90
Structure conservation index 0.83
SVM decision value -0.00
SVM RNA-class probability 0.532225
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12879679 90 - 22224390
AUUGUCAUUGUC---GUUGUCAUCAACUCAUAUUCGGUGUGGCCCAAAUCACUUGCUUGUUGGGCAACCGG--CAAAUGUGGGUCGCAUUUCAUU
............---((((....))))........(((((((((((..........(((((((....))))--)))...)))))))))))..... ( -27.02)
>DroSec_CAF1 82458 92 - 1
AUUGUCAUUGUC---GUUGUCAUCAACUCAUAUUCGGUGUGGCCCAAAUCACUUGCAUGUGGGGCAACCGGCGCAAAUGUGGGUCGCAUUUCAUU
............---((((....))))........(((((((((((...((.((((..((.((....)).)))))).)))))))))))))..... ( -29.50)
>DroYak_CAF1 89627 93 - 1
GUUGUCGUUGUCGUUGUUGUCAUCAACUCAUAUUCGGUGUGGCCCAAAUCACUUGCUUCUUGGGCAACCAG--CGAAUGUGGGUCGCAUUUCAUU
((((....((.((....)).)).))))........(((((((((((...((.(((((....((....))))--))).)))))))))))))..... ( -27.40)
>consensus
AUUGUCAUUGUC___GUUGUCAUCAACUCAUAUUCGGUGUGGCCCAAAUCACUUGCUUGUUGGGCAACCGG__CAAAUGUGGGUCGCAUUUCAUU
...............((((....))))........(((((((((((...((.(((....((((....))))..))).)))))))))))))..... (-23.30 = -23.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:31 2006