| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,868,904 – 12,869,016 |
| Length | 112 |
| Max. P | 0.552164 |
| Location | 12,868,904 – 12,869,016 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 72.90 |
| Mean single sequence MFE | -34.94 |
| Consensus MFE | -14.98 |
| Energy contribution | -16.98 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552164 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12868904 112 - 22224390 CGACGUACUCGGCCACGUCGCUGCUGUUGUGUUGUUGUUUAUUUGGAGGAUCCUGCGA--UGUUGCAGAUGCAACAGUCGACGACGACGAAGACGACGACUUUGGCAAUGAAAA ((((((........)))))).(((((....((((((((((..(((.((....)).)))--((((((....))))))((((....))))..))))))))))..)))))....... ( -36.80) >DroSec_CAF1 72622 109 - 1 CGACGUACUCGGCCACGUCGCAGCUGUUGUGUUGUUGUUUAUUUGGAGGAUCCUGCGA--UGUUGCAGCUGCAACAGUCGACG---ACGAAGACGACGACGAUGGCAAUGAAAA (((.....)))((((((((((((((((.(..((((.........((.....)).))))--..).))))))))....((((.(.---.....).)))))))).))))........ ( -39.20) >DroEre_CAF1 70754 90 - 1 CGACGUACUCGGCCACGUCGCUGCUGUUGUGC---UGUUUACUUGG-GGAUCCUGCGA--UGUUGCAGCUGCAACAGUCGAC---GCCGA---------------CGAUGAAAA ...(((..(((((...((((..((((((((((---(((..(((((.-((...)).)))--.)).))))).))))))))))))---)))))---------------..))).... ( -34.00) >DroYak_CAF1 78907 97 - 1 CGACGUACUCGGCCACGUCGCUGCUGUUGUGUUGUUGUUUACUUGGAGGAUCCUGCGA--UGUUGCAGCUGCAGCCGUCGAUGACGACGA---------------CAAUGAAAA .(((((........)))))(((((.((((((..(((((......((.....)).))))--)..)))))).)))))(((((....))))).---------------......... ( -31.80) >DroAna_CAF1 79521 90 - 1 CAACGUAUUCGGCCACGUCGCUGCUUUU-UGUUGUUGUU---GUGACGGCUGCUACUACUUGUGGCAGUUGCAACUGCAA--------------------UCUCUCAAUGGCCA ..........(((((((((((.((....-.......)).---))))))((((((((.....))))))))(((....))).--------------------........))))). ( -32.90) >consensus CGACGUACUCGGCCACGUCGCUGCUGUUGUGUUGUUGUUUACUUGGAGGAUCCUGCGA__UGUUGCAGCUGCAACAGUCGACG__GACGA____________U__CAAUGAAAA ((((((........))))))..(((((((((((((.......(((.((....)).)))......))))).)))))))).................................... (-14.98 = -16.98 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:30 2006