Locus 4933

Sequence ID X_DroMel_CAF1
Location 12,852,151 – 12,852,249
Length 98
Max. P 0.928525
window8046

overview

Window 6

Location 12,852,151 – 12,852,249
Length 98
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 66.70
Mean single sequence MFE -18.02
Consensus MFE -10.86
Energy contribution -10.22
Covariance contribution -0.64
Combinations/Pair 1.43
Mean z-score -1.69
Structure conservation index 0.60
SVM decision value 1.19
SVM RNA-class probability 0.928525
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12852151 98 + 22224390
CACCGAUUACCCCGCAUU------------UCCCCCAAUUU------UCCUUCCGUUUCUGUGCGUGCUUAUUUGCCUGUGCAUUAUUUGUACACACGAUUGCCUUUCGCAUAUUA
..................------------...........------............((((((.((....(((..((((((.....))))))..)))..))....))))))... ( -15.50)
>DroSec_CAF1 51126 109 + 1
CACCGAUUUCCCCGCAUUUCCCUG-CCAUUUCCCCCAAUUU------UCCUUCCGUUUCUGUGCGUGCUUAUUUGCCUGUACAUUAUUUGUACACACGAUUGCCUUUCGCAUAUUA
.............(((......))-)...............------............((((((.((....(((..((((((.....))))))..)))..))....))))))... ( -17.00)
>DroEre_CAF1 55631 90 + 1
C------------------CCCUG-CCUU-UCCCCCAAUUU------UCCUUCCGUUUGUGUGCGUGCUUAUUUGCCUGUACAUUAUUUGUACACACGAUUGCCCUUCGCAUAUUA
.------------------.....-....-...........------...........(((((((.((....(((..((((((.....))))))..)))..))....))))))).. ( -16.50)
>DroMoj_CAF1 95405 100 + 1
C---------CUCUGU-CCCCCUCUCCGUCCCCCUCACAGC------UCAUGCAUGAUCUAUGCGUGUUUAUUAACGUGCACAUUAUUUGUAUACACGAGUGGCUUUUGCAUAUUA
.---------......-..................(((...------.((((((((...))))))))........((((.(((.....)))...)))).)))((....))...... ( -16.20)
>DroPer_CAF1 77962 85 + 1
-------------------------------GGCCCCAUCUGCGGGCCCCUUCCGGGUCUGGGCGUGUUUAUCUGCCUGUACAUUAUUUGUACACACGAUUGCCUUUCGCAUAUUA
-------------------------------(((...(((..(((((((.....)))))))((((........))))((((((.....))))))...))).)))............ ( -24.90)
>consensus
C_________C_C______CCCU__CC_U_UCCCCCAAUUU______UCCUUCCGUUUCUGUGCGUGCUUAUUUGCCUGUACAUUAUUUGUACACACGAUUGCCUUUCGCAUAUUA
...........................................................((((((.((......)).((((((.....)))))).............))))))... (-10.86 = -10.22 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:24 2006