| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,851,281 – 12,851,373 |
| Length | 92 |
| Max. P | 0.627255 |
| Location | 12,851,281 – 12,851,373 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.01 |
| Mean single sequence MFE | -16.90 |
| Consensus MFE | -12.74 |
| Energy contribution | -12.77 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.06 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12851281 92 - 22224390 AUUUAUGCAAAUUGAUUGCGAGUCUAUUAAAUUUGCAUAUUUAUCAAUUUGUUGUGCGUGUUUCAGUUUCAAUUUC----UCAGCUUUUUAGCCCA--------------- ......(((((((((((((((((.......))))))).....))))))))))........................----...(((....)))...--------------- ( -15.00) >DroSec_CAF1 50316 102 - 1 AUUUAUGCAAAUUGAUUGCGAGUCUAUUAAAUUUGCAUAUUUAUCAAUUUGUUGUGCGUGUUUCUGUUUCAAGCUC----UCAGCUUUUUAGCCCAU-----GCUGUUACU ......(((((((((((((((((.......))))))).....))))))))))...(((((...(((....((((..----...))))..)))..)))-----))....... ( -22.40) >DroWil_CAF1 57146 93 - 1 AUUUAUGCAAAUUGCUUGCAAGUCUAUUAAAUUUGCAUAUUUAUCAAUUUGUUUUGCGUGCUUUUCUUCCGCUUU--------GCUUUUGAAUUCA----------CUGUU ...((((((((((................))))))))))....((((...((...(((...........)))...--------))..)))).....----------..... ( -14.29) >DroYak_CAF1 58167 101 - 1 AUUUAUGCAAAUUGAUUGCGAGUCUAUUAAAUUUGCAUAUUUAUCAAUUUGUUGUGCGUGUUUCAGUUUCAAUUUC----UCAGCUUUUU-GCCCAU-----GUUGUUGUU ......(((((((((((((((((.......))))))).....)))))))))).................((((..(----...((.....-))....-----)..)))).. ( -15.90) >DroAna_CAF1 59330 107 - 1 AUUUAUGCAAAUUGAUUGCGAGUCUAUUAAAUUUGCAUAUUUAUCAAUUUGUU---CGUUUUUCAGUUUCAGUUUCAGUGUCAGCUCUUC-CUCCAGCCUGGUUUGUUCUU ......(((((((((((((((((.......))))))).....)))))))))).---........((...(((..((((.....(((....-....))))))).)))..)). ( -16.10) >DroPer_CAF1 77030 97 - 1 AUUUAUGCAAAUUGAUUGCGAGUCUAUUCAAUUUGCAUAUUUAUCAAUUUGUUUUGCGUGGCUCAGUUUCAAUUUG-------G-UUUUU-UUCAGG-----GGUGUGGUG .......((((((((..(((((.((((.(((...(((.(((....))).))).))).))))))).)).))))))))-------.-.....-......-----......... ( -17.70) >consensus AUUUAUGCAAAUUGAUUGCGAGUCUAUUAAAUUUGCAUAUUUAUCAAUUUGUUGUGCGUGUUUCAGUUUCAAUUUC____UCAGCUUUUU_GCCCA______G_UGUUGUU ......(((((((((((((((((.......))))))).....))))))))))........................................................... (-12.74 = -12.77 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:23 2006