Locus 4931

Sequence ID X_DroMel_CAF1
Location 12,849,580 – 12,849,680
Length 100
Max. P 0.611015
window8044

overview

Window 4

Location 12,849,580 – 12,849,680
Length 100
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 82.04
Mean single sequence MFE -23.08
Consensus MFE -17.30
Energy contribution -19.13
Covariance contribution 1.84
Combinations/Pair 1.17
Mean z-score -1.44
Structure conservation index 0.75
SVM decision value 0.16
SVM RNA-class probability 0.611015
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12849580 100 - 22224390
GCCGGGCCAUUAAAAUGCAUUCACAUGCGUUUCGCA-CUGCGAAGAGCAUUGUUUGACAGCUGUCAACUGACAAAUCU-CCCCAUCCCCUAGCCCAUAUUCU
...((((........((((..((.((((.((((((.-..)))))).))))))..)).))..((((....)))).....-............))))....... ( -24.80)
>DroSec_CAF1 48665 96 - 1
GCCGGGUUAUUAAAAUGCAUUCACAUGCGUUUCGCA-CUGCGAGGAGCAUUGUUUGACAGCUGUCAACUGGCAAAUCU-CCCCAUCU----GCCCAUAUUCU
...((((......(((((((....)))))))((((.-..))))((((..(((((((((....)))))...))))..))-))......----))))....... ( -25.00)
>DroSim_CAF1 57600 96 - 1
GCCGGGCCAUUAAAAUGCAUUCACAUGCGUUUCGCA-CUGCGAAGAGCAUUGUUUGACAGCUGUCAACUGGCAAAUCU-CCCCAUCU----GCCCAUAUUCU
(((((........(((((.(((.((((((...))))-.)).)))..)))))..(((((....))))))))))......-........----........... ( -24.60)
>DroEre_CAF1 53200 96 - 1
GCCGGGCCAUUAAAAUGCAUUCACAUGCGUUUCGCG-CUGCGAGCAGCAUUGUUUGACAGCUGUCAACUGGCAAAUCU-CCCCAUCU----GCCCAUAUUCU
...((((.....((((((((....))))))))...(-((((((((......))))).))))((((....)))).....-........----))))....... ( -27.00)
>DroYak_CAF1 56532 91 - 1
GCCGCGACAUUAAAAUGCAUUCACAUGCGUUUCGCA-CUGCGAGGAGCAUUGUUUGACAGCUGUCAACUGGCAAAUCUUCCCCAUCU----------AUUCU
(((((..(.....(((((((....)))))))((((.-..)))))..)).....(((((....)))))..)))...............----------..... ( -21.60)
>DroAna_CAF1 57731 77 - 1
GCCGAGCCAUUAAAAUGCAUUCACAUGCGUUUCGCAAAUGCU---CGCAUUGUUUGACAGCUAUCCU------------------UA----GUCCUUAGUCC
((.((((.(((.((((((((....))))))))....))))))---))).....((((..((((....------------------))----))..))))... ( -15.50)
>consensus
GCCGGGCCAUUAAAAUGCAUUCACAUGCGUUUCGCA_CUGCGAGGAGCAUUGUUUGACAGCUGUCAACUGGCAAAUCU_CCCCAUCU____GCCCAUAUUCU
...((((........((((..((.((((.((((((....)))))).))))))..)).))..((((....))))..................))))....... (-17.30 = -19.13 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:22 2006