Locus 4929

Sequence ID X_DroMel_CAF1
Location 12,843,293 – 12,843,388
Length 95
Max. P 0.994283
window8042

overview

Window 2

Location 12,843,293 – 12,843,388
Length 95
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 80.36
Mean single sequence MFE -19.75
Consensus MFE -15.71
Energy contribution -16.27
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -2.57
Structure conservation index 0.80
SVM decision value 2.47
SVM RNA-class probability 0.994283
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12843293 95 - 22224390
UUGUUCAGGUAAACAAAGACUUUCUUGAAAACUUUCAUUU---GGAAUUUGUUUGCCGCGUCGCUUUUGCGAUUUGUUUUUUUUUUUUUACAUAUUUU---
.......((((((((((..((....((((....))))...---))..))))))))))..(((((....))))).........................--- ( -21.10)
>DroSim_CAF1 51374 85 - 1
UUGUUCAGGUAAACAAAGACUUCCAUGAAAACUUUCAUUU---GGACUUUGUUUGCUGCGUCGCUUUUGCGAUUUU----------UUUACAUUUAUU---
.......(((((((((((...((((((((....))))..)---))))))))))))))..(((((....)))))...----------............--- ( -22.40)
>DroEre_CAF1 47317 88 - 1
UUGUUCAGGUAAACAAAGACUUCGCCGAAAACUUUCAUUUGCCGGAAUUUGGUUGCCGCGUCGCUUUUGCAAUAUU----------UGUAUCUAUUUU---
.......(((((.((((...((((.((((........)))).)))).)))).)))))(((.......)))......----------............--- ( -14.50)
>DroYak_CAF1 50363 89 - 1
UUGUUCAGGUAAACAAAGACUUUGCUGAAAACUUUCAUUU--UGGAAUUUGUUUGCCACGUCGCUUCUGCGAUUUU----------UAUACUUUUUUUUUU
.......((((((((((..((..(.((((....)))).).--.))..))))))))))..(((((....)))))...----------............... ( -21.00)
>consensus
UUGUUCAGGUAAACAAAGACUUCCCUGAAAACUUUCAUUU___GGAAUUUGUUUGCCGCGUCGCUUUUGCGAUUUU__________UUUACAUAUUUU___
.......((((((((((..((....((((....))))......))..))))))))))..(((((....)))))............................ (-15.71 = -16.27 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:20 2006