| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,827,484 – 12,827,601 |
| Length | 117 |
| Max. P | 0.786046 |
| Location | 12,827,484 – 12,827,601 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.99 |
| Mean single sequence MFE | -29.21 |
| Consensus MFE | -21.14 |
| Energy contribution | -23.76 |
| Covariance contribution | 2.62 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.786046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12827484 117 - 22224390 UCCGCUAAUAUGUUGCGGGGCUUACAUUGCGGCUAAUCCUUCUGUUGUCAGGGAUUACUUUGCCAUGGU---CUUGGGCUUCCACUAUCUCCAAUAUAAGUCCCGAUCAUAACUUACUUA ........((((...(((((((((.((((.(((((((((..(((....)))))))))....)))..(((---..(((....)))..)))..)))).)))))))))..))))......... ( -34.20) >DroSec_CAF1 25479 116 - 1 UCAG-UAAUGUGUUGCGGGGCUUACAUUGCGGCUAAUCCUUCUGUUGUCAGGGAUUACUUUGCCCUGGU---CCUGGGCUUCCACUAUCUCCAAUAUAAGUCCCGAUCAUAACUUACUUA ..((-(((((((...(((((((((.((((.((.((((((..(((....)))))))))....((((....---...)))).........)).)))).)))))))))..))))..))))).. ( -36.90) >DroSim_CAF1 35187 117 - 1 UCAGCUAAUGUGUUGCGGGGCUUACAUUGCGGCUAAUCCUUCUGUUGUCAGGGAUUACUUUGCCCUGGU---CCUGGGCUUCCACUAUCUCCAAUAUAAGUCCCGAUCAUAACUUACUUA ........((((...(((((((((.((((.((.((((((..(((....)))))))))....((((....---...)))).........)).)))).)))))))))..))))......... ( -34.90) >DroEre_CAF1 33586 91 - 1 UCAGCUAAUGUGUAGCUGCGCUUACAA-GCGGCUAAUCCUUCUGUAGCCAGGA-UU--------------------------CCCUAUCUCCAAUA-AAGUCCCGAUCAUAACUAACUUG .((((((.....)))))).(((....)-))(((((.........))))).(((-((--------------------------..............-.)))))................. ( -16.36) >DroYak_CAF1 34092 120 - 1 UCAGCUAAUGUGCUGCAGAGCUUACAAUGCGGCUAAUCCUUCUGUUGUUAGGGAUUACUUUGCCCUGCUCCUCCUGGGCUUCCACCAUCUUCAAUAUAAGUCCCGAUCAUAACUUACUUA ..(((......)))((((.((.......))(((((((((((........))))))))....))))))).....(.((((((................)))))).)............... ( -23.69) >consensus UCAGCUAAUGUGUUGCGGGGCUUACAUUGCGGCUAAUCCUUCUGUUGUCAGGGAUUACUUUGCCCUGGU___CCUGGGCUUCCACUAUCUCCAAUAUAAGUCCCGAUCAUAACUUACUUA ........((((...(((((((((.((((.((.((((((((........))))))))....((((.((....)).)))).........)).)))).)))))))))..))))......... (-21.14 = -23.76 + 2.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:13 2006