Locus 492

Sequence ID X_DroMel_CAF1
Location 1,419,845 – 1,419,946
Length 101
Max. P 0.806103
window757

overview

Window 7

Location 1,419,845 – 1,419,946
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.49
Mean single sequence MFE -22.22
Consensus MFE -12.76
Energy contribution -12.65
Covariance contribution -0.11
Combinations/Pair 1.15
Mean z-score -1.94
Structure conservation index 0.57
SVM decision value 0.63
SVM RNA-class probability 0.806103
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1419845 101 + 22224390
------CCUUGC-------------CCCAUGAAUUUAUUAGAAAUUCAAGAGUGAAACUCUCGGAUUUCUACACACUCCACUCGACUCGACUCGCCUCCACUCGUCCAGGCGCAGCACGU
------...(((-------------.............(((((((((.((((.....)))).))))))))).....................(((((..........)))))..)))... ( -20.90)
>DroSec_CAF1 26253 101 + 1
------CCUUGC-------------CCCAUAAAUUUAUUAGAAAUUCAAGAGUGAAACUCUCGGAUUUCUACACACUCCACUCGACUCGACUCGCCUCCACUCGUCCAGGCGCAGCACGU
------...(((-------------.............(((((((((.((((.....)))).))))))))).....................(((((..........)))))..)))... ( -20.90)
>DroSim_CAF1 16892 101 + 1
------CCUUGC-------------CCCAUGAAUUUAUUAGAAAUUCAAGAGUGAAACUCUCGGAUUUCUACACACUCCACUCGACUCGACUCGCCUCCACUCGUCCAGGCGCAGCACGU
------...(((-------------.............(((((((((.((((.....)))).))))))))).....................(((((..........)))))..)))... ( -20.90)
>DroEre_CAF1 21540 109 + 1
------CCUUGCCCCUUGCCCCUGCCCCAUGAAUUUAUUAGAAAUUCAGGAGUGAAACUCUCGGAUUUCUACACACUCGAAUCGAAUCGACUCG-----ACUCGUCCAGGCGCAGCACGU
------...(((....(((.((((..............(((((((((..(((.....)))..)))))))))......(((.((((......)))-----).)))..)))).))))))... ( -29.90)
>DroWil_CAF1 90014 97 + 1
AACCCCCCAUGC-------------UCUAUGAAUUUAUUAGAAAUUCAAGAGUGAAAUUCUCGGAUUUCUUAACGCAC-ACCCCCUUC-ACCUG---CCACACACACAGU-----CCCAU
..........((-------------(((.(((((((.....))))))))))))((((((....)))))).....(((.-.........-...))---)............-----..... ( -13.82)
>DroYak_CAF1 17933 92 + 1
------CCUUGC-------------CCCAUGAAUUUAUUAGAAAUUCAAGAGUGAAACUCUCGGAUUUCUACACACUCGACUCUGUUCGACUCG-----ACC----AGGGCGCAGCACGU
------..((((-------------(((..........(((((((((.((((.....)))).))))))))).....((((.((.....)).)))-----)..----.))).))))..... ( -26.90)
>consensus
______CCUUGC_____________CCCAUGAAUUUAUUAGAAAUUCAAGAGUGAAACUCUCGGAUUUCUACACACUCCACUCGACUCGACUCG___CCACUCGUCCAGGCGCAGCACGU
......................................(((((((((.((((.....)))).)))))))))................................................. (-12.76 = -12.65 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:52 2006