| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,800,263 – 12,800,368 |
| Length | 105 |
| Max. P | 0.905380 |
| Location | 12,800,263 – 12,800,368 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.65 |
| Mean single sequence MFE | -30.28 |
| Consensus MFE | -15.34 |
| Energy contribution | -17.90 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.51 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.905380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12800263 105 + 22224390 AUGGCAGCACAUAAAUCAGCUGGCUUCGCUACGUGCAUAACUAACUUAUUGCACACUU--------UGGGGCAGCU----AUAUUGCAAUUGUUUGCUGCCACACAAUCGC---CAGUCA .((((((((.((((........((((((....(((((............)))))....--------)))))).((.----.....))..)))).)))))))).........---...... ( -30.10) >DroSim_CAF1 8214 101 + 1 AUGGCGGAACAUAAAUCAGCUGGCUUCGCUUCGUGCAUAA----CUUAUUGCACACUU--------UGGGGCAGCU----AUAUUGCAAUUGUUAGCUGCCACACAAUCGC---CAGUCA (((......)))......((((((........(((((...----.....)))))...(--------((.(((((((----(............))))))))...)))..))---)))).. ( -32.80) >DroEre_CAF1 6506 105 + 1 AUGACAGCACAUAAAUCAGCUUGCCUCGCUUCGUGCAUAA----CUUAUUGCACACUU--------UGGGGCAGCUCUGUAUAUUGCAAUUGUUUGCUGCCACACAAUUGC---CAGUCA .((((............((((.((((((....(((((...----.....)))))....--------)))))))))).........((((((((.((....)).))))))))---..)))) ( -32.60) >DroYak_CAF1 7565 103 + 1 AUGGCAGCACAUAAAUCAGCUGGCUUCGCUUCGUGCAUAA----CUUAUUGCACACUU--------UGGGGCAGCU----AUAUUGCAAUUGUUUGCUGCCACACA-UUGCGCACAGUCA .((((((((.((((........((((((....(((((...----.....)))))....--------)))))).((.----.....))..)))).))))))))....-............. ( -31.20) >DroAna_CAF1 6872 94 + 1 UUGGCAGACCAUAAAUCAGCUGGCAACGGUUCGGGCAUAA----CUUAUUGCACACUUUUUGGAUUUGGGGCUGC---------UGCAAUUGUUAC--------GAAUCGA---CAGC-- ..(((((.((.(((((((((((....)))))...(((...----.....)))..........)))))).))))))---------)....(((((..--------.....))---))).-- ( -24.70) >consensus AUGGCAGCACAUAAAUCAGCUGGCUUCGCUUCGUGCAUAA____CUUAUUGCACACUU________UGGGGCAGCU____AUAUUGCAAUUGUUUGCUGCCACACAAUCGC___CAGUCA .((((((((.((((........((((((...)(((((............))))).............))))).((..........))..)))).)))))))).................. (-15.34 = -17.90 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:01 2006