Locus 4914

Sequence ID X_DroMel_CAF1
Location 12,795,918 – 12,796,031
Length 113
Max. P 0.871243
window8014

overview

Window 4

Location 12,795,918 – 12,796,031
Length 113
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 80.30
Mean single sequence MFE -19.52
Consensus MFE -13.09
Energy contribution -14.15
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -2.01
Structure conservation index 0.67
SVM decision value 0.87
SVM RNA-class probability 0.871243
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12795918 113 + 22224390
UGCAGAAUGAUAAUUUUGAACCCCCCACUCGCCGCAAGUCGCGGAA-AAACAUUUCACAACUUGCGCAUAUUUUGUGUAAAAUAAUUUGUAAAAUUUCAUUUAUUUGAUUUGAU
....((((((.(((((((............((.((((((.(.((((-.....)))).).)))))))).((((((....)))))).....)))))))))))))............ ( -19.70)
>DroSim_CAF1 2240 111 + 1
UGCAAAAUGAUAAUUUUGCACC--CCACCCACCUCAAGUCUCGAAA-AAACAUUUCACAACUUGCGCAUAUUUUGUGUAAAAUAAUUUGUAAAAUUUCAUUUAUUUGAUUUGAU
((((((((....))))))))..--.........(((((((..((((-.....)))).....(((((((.....)))))))..........................))))))). ( -21.00)
>DroEre_CAF1 2496 87 + 1
--------------------------CCCCAGCUCAAGUCAUGGCA-AAACUUUUCACAACUUGCGCAUAUUUUGUGUAAAAUAAUUUGUCAAAUUUCAUUUAUCUGAUUUGAU
--------------------------.......(((((((((((((-((..(((((((((..((....))..))))).))))...))))))).............)))))))). ( -14.91)
>DroYak_CAF1 2193 112 + 1
UGCAGAAUGAUAAUUUUGCCAC--CUCCCCACCUCAAGUCAAGGCAUAAACAUUUCACAACUUGCGCAUAUUUUGUGUAAAAUAAUUUGUAAAAUUUCAUUUAUUUGAUUUGAU
.(((((((....)))))))...--.........((((((((((........((((.((((.(((((((.....)))))))......)))).))))........)))))))))). ( -22.49)
>consensus
UGCAGAAUGAUAAUUUUGCACC__CCACCCACCUCAAGUCACGGAA_AAACAUUUCACAACUUGCGCAUAUUUUGUGUAAAAUAAUUUGUAAAAUUUCAUUUAUUUGAUUUGAU
.(((((((....)))))))..............(((((((......................((((((.....))))))((((((..((........)).))))))))))))). (-13.09 = -14.15 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:56 2006