Locus 4912

Sequence ID X_DroMel_CAF1
Location 12,788,351 – 12,788,449
Length 98
Max. P 0.532102
window8011

overview

Window 1

Location 12,788,351 – 12,788,449
Length 98
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 78.96
Mean single sequence MFE -25.73
Consensus MFE -15.67
Energy contribution -16.62
Covariance contribution 0.95
Combinations/Pair 1.18
Mean z-score -1.45
Structure conservation index 0.61
SVM decision value -0.00
SVM RNA-class probability 0.532102
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12788351 98 + 22224390
UUCUGGUAUCGGAACACGCACUCCGCAUACAAAUGCUUUAAAAAUAUGCGCAGAUUAUCCUGCGUUUGGG---CCUGCGAUGCCACAUCCACAUUUUGCGA
...((((((((.....)(((..((((((....))))........((.((((((......)))))).))))---..))))))))))................ ( -26.50)
>DroVir_CAF1 13378 83 + 1
UUCUGGUAGCGAUAGACGCACUCGGCAUACAAAUGCUUGAGAAAUGUGCGUAGAUUAUCCUGCGGCUGUG---------GUGGCAUAGCCCC---------
.....((((.((((((((((((((((((....)))).))).....))))))...)))))))))(((((((---------....)))))))..--------- ( -29.60)
>DroSec_CAF1 3088 98 + 1
UUCUGGUAUCGAAACACGCACUCCGCAUACAAAUGCCUUAAAAAUAUGCGCAGAUUAUCCUGCGUUUGGG---CCUGCGAUGCCACAUCCACAUUUUCCAC
...((((((((......((.....))........((((.........((((((......))))))..)))---)...))))))))................ ( -25.50)
>DroEre_CAF1 2876 98 + 1
UUCUGGUAUCGAAACACGCACUCGGCAUACAAAUGCUUUAAAAAGAUGCGCAGAUUAUCCUGCGUUUGGG---CCUGCGAUGCCACAUCCAAAUUUAGCGG
...((((((((...((.((....(((((....)))))..........((((((......))))))....)---).))))))))))................ ( -25.10)
>DroYak_CAF1 5510 93 + 1
UUCUGGUAUCGAAACACGCACUCGGCAUACAAAUGCUUUAAGAAUAUGCGCAGAUUAUCCUGCGUUUGGG---CCUGCGAUCCCGCAUCCAAAUUA-----
...(((...((.....((((...(((...(((((((...........))((((......))))))))).)---))))))....))...))).....----- ( -21.80)
>DroAna_CAF1 8416 98 + 1
UUCUGGUAUCUGUACACGCACUCGGCAUACAAAUGCUUUAAAAAUAUGCGCAGAUUAUCCUGCGGCUGGGGCGCCUCCUGUUCCAUGUCUG---GUUCAGU
.....(((....))).(((.((((((........((...........))((((......)))).)))))))))....(((..(((....))---)..))). ( -25.90)
>consensus
UUCUGGUAUCGAAACACGCACUCGGCAUACAAAUGCUUUAAAAAUAUGCGCAGAUUAUCCUGCGUUUGGG___CCUGCGAUGCCACAUCCACAUUUU_CG_
...((((((((.............((((....))))............(((((......))))).............))))))))................ (-15.67 = -16.62 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:53 2006