Locus 4910

Sequence ID X_DroMel_CAF1
Location 12,782,151 – 12,782,261
Length 110
Max. P 0.994039
window8008

overview

Window 8

Location 12,782,151 – 12,782,261
Length 110
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 90.53
Mean single sequence MFE -15.28
Consensus MFE -14.30
Energy contribution -14.30
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.52
Structure conservation index 0.94
SVM decision value 2.45
SVM RNA-class probability 0.994039
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12782151 110 + 22224390
CGCAACUCAGCGACUCGGUCACAUUCAUUAACGGCACCUACGCCGCCACUUACAAUUUACCCGAAAAAAAAAAAAACAAAAAUGAAAAAAAAUCACCCAUAUUAACCGAA
(((......)))..(((((............((((......)))).....................................(((.......))).........))))). ( -14.30)
>DroSec_CAF1 5509 104 + 1
CGCAACUCAGCGACUCGGUCACAUUCAUUCACGGCACAUACGCCGCCACUUACAAUUUACCCGAAAAA------AACAAAAAUGAAAAAAAAUCACCCAUAUUAACCGAA
(((......)))..(((((............((((......)))).......................------........(((.......))).........))))). ( -14.30)
>DroEre_CAF1 5734 104 + 1
CGCAACUCAGCGACUCGGUCACAUUCACACACGGCUCAUAUGCCGCCACUUACAAUUUACCCGAAAAAA-----ACAAAAAAUGA-UAAAAAUCAUCCAUAUUAACCGAA
(((......)))..(((((............((((......))))........................-----.......((((-(....)))))........))))). ( -17.10)
>DroYak_CAF1 7048 104 + 1
CGCAACUCAGCGACUCGGUCACAUUCAUACACGGCUCAUACGCCGCCACUUACAAUUUACCCGAAAAAA-----AACAUAAAUGA-AUAAAAUCAUCCAUAUUAACCGAA
(((......)))..(((((............((((......))))........................-----.......((((-......))))........))))). ( -15.40)
>consensus
CGCAACUCAGCGACUCGGUCACAUUCAUACACGGCACAUACGCCGCCACUUACAAUUUACCCGAAAAAA_____AACAAAAAUGA_AAAAAAUCACCCAUAUUAACCGAA
(((......)))..(((((............((((......)))).....................................(((.......))).........))))). (-14.30 = -14.30 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:51 2006