Locus 491

Sequence ID X_DroMel_CAF1
Location 1,419,210 – 1,419,306
Length 96
Max. P 0.843765
window756

overview

Window 6

Location 1,419,210 – 1,419,306
Length 96
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 84.30
Mean single sequence MFE -24.28
Consensus MFE -21.08
Energy contribution -21.57
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.87
SVM decision value 0.76
SVM RNA-class probability 0.843765
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1419210 96 + 22224390
--ACGCAGAGACAACAGUGAGUCGUUGUGGUCCCCGACUCCUGCCC------UGC------CGCCGACACAUCAGUGCCCGGCACAACCCUCACCAAAUCACCAAUUCAC
--..((((.(....(((.((((((..........))))))))).))------)))------.((((.(((....)))..))))........................... ( -24.20)
>DroSec_CAF1 25633 96 + 1
--ACGCAGAGACAACAGUGAGUCGACGUGGUCCCCGACUCCUGAAC------UGU------CGCCGCCACACCAGUGCCCGGCACAACCCUCACCAAAUCACCAAUUCAC
--.....(((....(((.((((((..........)))))))))...------(((------.((((.(((....)))..)))))))...))).................. ( -24.80)
>DroSim_CAF1 16257 96 + 1
--ACGCAGAGACAACAGUGAGUCGUCGUGGUCCCCGACUCCUGCCC------UGU------CGCCGACACACCAGUGCCCGGCACAACCCUCACCAAAUCACCAAUUCAC
--.....((((((.(((.((((((..(....)..)))))))))...------)))------)((((.(((....)))..))))...............)).......... ( -25.90)
>DroYak_CAF1 17316 107 + 1
AAGUGCAGAGACAACAGUGAGUC---GUGGUCCCCGACUCCUCCUCCUCCCCUCCCUCCCAUGCCGACACACCAGUGCCCGGCUCAACCCUCACCAAAACACCAAAUCAC
..(((..(((.....((.(((((---(.(....)))))))))....))).............((((.(((....)))..))))................)))........ ( -22.20)
>consensus
__ACGCAGAGACAACAGUGAGUCGUCGUGGUCCCCGACUCCUGCCC______UGC______CGCCGACACACCAGUGCCCGGCACAACCCUCACCAAAUCACCAAUUCAC
.......(((....(((.((((((..........)))))))))...................((((.(((....)))..))))......))).................. (-21.08 = -21.57 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:51 2006