Locus 4906

Sequence ID X_DroMel_CAF1
Location 12,763,588 – 12,763,681
Length 93
Max. P 0.637604
window8003

overview

Window 3

Location 12,763,588 – 12,763,681
Length 93
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 79.34
Mean single sequence MFE -10.80
Consensus MFE -8.84
Energy contribution -8.62
Covariance contribution -0.22
Combinations/Pair 1.09
Mean z-score -1.09
Structure conservation index 0.82
SVM decision value 0.21
SVM RNA-class probability 0.637604
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12763588 93 + 22224390
AACAACAUCAUCAUCAACUCCCAUCAAAUUAAACGAAUUGGGUCAAAGGAUAAACAGAAUUAUCUUCAAGAGCCUA--UGCAAAAAAAAAGAGGA
....................((.((..............((.((..(((((((......)))))))...)).))..--............)))). (  -9.49)
>DroGri_CAF1 31566 90 + 1
UGACAAC-CACC-CCAAAACACGGAAAAUUAUAGGAAUUGGGUCAAAAGAUAAACGGAAUUAUCUUCAAGAGCCUA--UGCAAAAAAAGAAGAA-
.......-....-((.......)).....((((((..((((......((((((......))))))))))...))))--))..............- ( -10.30)
>DroSec_CAF1 18874 93 + 1
AGCAACAUCAUCAUAAACUCCCAUCAAAUUAAACGAAUUGGGUCAAAGGAUAAACAGAAUUAUCUUCAAGAGCCUA--UGCAAAAAAAAAAAUGA
.(((......((.......((((...............))))....(((((((......)))))))...)).....--))).............. ( -10.46)
>DroEre_CAF1 18856 91 + 1
AGCAACAUCAUCAUCAACUCCCAUCAAAUUAAACGAAUUGGGUCAAAGGAUAAACAGCAUUAUCUUCAAGAGCCUA--UGCAAAAAAAAAGAA--
.(((......((.......((((...............))))....(((((((......)))))))...)).....--)))............-- ( -10.46)
>DroMoj_CAF1 29580 83 + 1
AAAAAAA-UAUC-ACAA--------AAAUUAAACGAAUUGGGUCAAAAGAUAAGCGGAAUUAUCUUGAAGAGCCUA--UGCGAAAAAUGAGAAAC
.......-....-....--------........((....((.((..(((((((......)))))))...)).))..--..))............. ( -12.70)
>DroAna_CAF1 20512 91 + 1
UGCCACAACAUCAUCA----UCAUCAAAUUAAACGAAUUGGGUCAAAGGAUAAACAGAAUUAUCUUCAAGAGCCUUUUUGCAAAAAAAAAGCAAA
................----.............((((..((.((..(((((((......)))))))...)).))..))))............... ( -11.40)
>consensus
AGCAACAUCAUCAUCAACUCCCAUCAAAUUAAACGAAUUGGGUCAAAGGAUAAACAGAAUUAUCUUCAAGAGCCUA__UGCAAAAAAAAAGAAAA
.......................................((.((..(((((((......)))))))...)).))..................... ( -8.84 =  -8.62 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:46 2006