| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,758,836 – 12,758,932 |
| Length | 96 |
| Max. P | 0.580946 |
| Location | 12,758,836 – 12,758,932 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 78.35 |
| Mean single sequence MFE | -23.52 |
| Consensus MFE | -17.34 |
| Energy contribution | -17.57 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.580946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12758836 96 - 22224390 UGAGACUGAUAACGAGUCACCCUGCAGGAAUUGCGGAUGGCUUUACAUUUCAAGGAAGUUGACUCUAGUAGCUAU--UGCUCAAUAUAAGAGCCAUAC ...((((.......))))...((((((...))))))((((((((.....((((.....)))).....(.(((...--.))))......)))))))).. ( -21.20) >DroEre_CAF1 14899 95 - 1 UGAGACUGAUAACGAGUCACCCUGCAAAAAUUGCGGGUGGCAUUACAUUUCAAGGAAGUUGACUUAAGCAGAUAUCCUGCUGAAUAUGAAAGCCA--- (((((.((.(((...(((((((.(((.....)))))))))).)))))))))).((...........(((((.....)))))...........)).--- ( -25.95) >DroYak_CAF1 16312 82 - 1 UGAGUCUGAUAACGAGUCACCCUGCAAAAAUUGCGGGUGGCAUUACACUUCAAGGAAGUUGCCUAAAGUAGAUAUCCUGCUG---------------- ..(((..((((.(..(((((((.(((.....)))))))))).....((((..(((......))).)))).).))))..))).---------------- ( -23.40) >consensus UGAGACUGAUAACGAGUCACCCUGCAAAAAUUGCGGGUGGCAUUACAUUUCAAGGAAGUUGACUAAAGUAGAUAUCCUGCUGAAUAU_A_AGCCA___ .(((...........(((((((.((((...))))))))))).....(((((...)))))...))).(((((.....)))))................. (-17.34 = -17.57 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:43 2006