Locus 4902

Sequence ID X_DroMel_CAF1
Location 12,755,159 – 12,755,259
Length 100
Max. P 0.516353
window7998

overview

Window 8

Location 12,755,159 – 12,755,259
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 88.31
Mean single sequence MFE -15.41
Consensus MFE -11.61
Energy contribution -12.23
Covariance contribution 0.63
Combinations/Pair 1.16
Mean z-score -1.40
Structure conservation index 0.75
SVM decision value -0.03
SVM RNA-class probability 0.516353
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12755159 100 + 22224390
AUCCUAGCUCUUCCCCACCAGCAUUAUCCAUAUAUACCAGCAGCUGCAUCCCCAUCUGCCCAACCAUCGGAUAUCUCUCAGCUGACUGAGUCCUGCAGAC
....................(((.(((((..........((((.((......)).)))).........)))))...(((((....)))))...))).... ( -16.51)
>DroSec_CAF1 10550 91 + 1
---------CUUCCCCACCAGUAUUAUCCAUAUAUACCAGCAGCUGCAUCCCCAUCUGCCCACCCAUCGGAUAUCUCUCAGCUGACUGAGUCCUGCAGAC
---------.........(((...(((((..........((((.((......)).)))).........)))))...(((((....)))))..)))..... ( -14.71)
>DroSim_CAF1 7055 91 + 1
---------CUUCCCCACCAGCAUUAUCCAUAUAUACCAGCAGCUGCAUCCCCAUCUGCCCACCCAUCGGAUAUCUCUCAGCUGACUGAGUCCUGCAGAC
---------...........(((.(((((..........((((.((......)).)))).........)))))...(((((....)))))...))).... ( -16.51)
>DroYak_CAF1 12522 86 + 1
---------CUGCCCCACCAGUAUUGUCCAUGUAUACCAGCAUCUGCAUCCCCG-----CCACCCAUCGGAUAUCUCUCAGCUGACUGACUCCUGCAGAC
---------((((...........(((((((((......))))..((......)-----)........)))))....((((....)))).....)))).. ( -13.90)
>consensus
_________CUUCCCCACCAGCAUUAUCCAUAUAUACCAGCAGCUGCAUCCCCAUCUGCCCACCCAUCGGAUAUCUCUCAGCUGACUGAGUCCUGCAGAC
....................(((.(((((..........((((.((......)).)))).........)))))...(((((....)))))...))).... (-11.61 = -12.23 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:42 2006