| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 223,981 – 224,098 |
| Length | 117 |
| Max. P | 0.783892 |
| Location | 223,981 – 224,098 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 82.81 |
| Mean single sequence MFE | -23.44 |
| Consensus MFE | -18.65 |
| Energy contribution | -18.61 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.783892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 223981 117 - 22224390 AAUUACAACAGCAAGUGCGGAGAACUAAUGACAACUACAGUAGCAAUUGCUCCGCACUGUGGCAAAAAAUACAAAUAAUUUCAAUGCCGUAUCAUCCAACCAGAAUGCA-AUUGUCUG ....((((..((((((((((((........((.......))........)))))))))..((((..((((.......))))...)))).................))).-.))))... ( -25.79) >DroSec_CAF1 18869 115 - 1 AAUUACAACAGCAAGUGCGGAGAACUAAUGACAACUACAGUAGCAAUUGCUCCGCACUGUGGCAAAAAAUCCAAAUAAUUUCAAUGCGGUA---UCCAACUAGAGUGCACAUUUGCUG ........(((((((((.((((........((.......))........))))(((((.(((........((...............))..---.....))).))))).))))))))) ( -28.01) >DroSim_CAF1 15759 115 - 1 AAUUACAACAGCAAGUGCGGAGAACUAAUGACAACUACAGUAGCAAUUGCUCCGCACUGUGGCAAAAAAUCCAAAUAAUUUCAAUGCGAUA---UCCAACUAGAGUGCACAUUUGCUG ........(((((((((.((((........((.......))........))))(((((.(((......(((((...........)).))).---.....))).))))).))))))))) ( -28.29) >DroEre_CAF1 19765 105 - 1 AAUUACAACAGCAAGUGCGGAGAACUAAUGACAACUACAGUAGCAAUUGCUCUGCACUGUGGCAAAAAAUCCAAAUAAUUUCUAUGCGG-------------CAAUUCAAAUUUUCUU ..........((((((((((((........((.......))........))))))))).(((........)))...........)))..-------------................ ( -18.79) >DroYak_CAF1 20386 105 - 1 AAUUACAACAGCAAGUGCGGCGAACUAAUGACAACUACAGUAGCAAUUGCUCUGCACUGUGGCAAAAACUGUAGAUAAACUACCCAUAA-------------UAAUUCAAAUUUUCCU ..........((.((((((((((.(((.((.......)).)))...)))))..)))))...)).......((((.....))))......-------------................ ( -16.30) >consensus AAUUACAACAGCAAGUGCGGAGAACUAAUGACAACUACAGUAGCAAUUGCUCCGCACUGUGGCAAAAAAUCCAAAUAAUUUCAAUGCGGUA___UCCAAC_AGAAUGCAAAUUUUCUG ..........((.(((((((((........((.......))........)))))))))...))....................................................... (-18.65 = -18.61 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:20 2006