| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,730,015 – 12,730,120 |
| Length | 105 |
| Max. P | 0.780800 |
| Location | 12,730,015 – 12,730,120 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 81.76 |
| Mean single sequence MFE | -27.76 |
| Consensus MFE | -17.01 |
| Energy contribution | -17.82 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.780800 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12730015 105 + 22224390 GAGCUGGGAAAGUUCUUAUCAAAUUUUUGCUUCCUAGGAUG-AG------------AGUUGGAUGUAAUACCAUCUAUAUAGUGUCUUGUUUAAUUAGUAAGCACUAUCAGCUCCUAA (((((((.....((((((((.................))))-))------------)).((((((......))))))..(((((.((((((.....)))))))))))))))))).... ( -26.33) >DroSec_CAF1 82636 105 + 1 GAGCUGGGCAAAUUCUUAUCAAAUUUUUGUUUCUUAGGAUG-GC------------AGUUGGAUGUAAUUUCAUCUAUAUAGUGUCGUGUUCAAUUAGCAAGCACUAUCAGCUCCUAA (((((((((....(((((..((((....))))..)))))..-))------------...((((((......))))))..((((((..((((.....)))).))))))))))))).... ( -28.50) >DroSim_CAF1 66748 105 + 1 GAGCUGGGCAAAUUCUUAUCAAAUUUUUGCUUCUUAGGAUG-GC------------AGUUGGAUGUAAUUUCAUCUAUAUAGUGUCGUGUUCAAUUAGCAAGCACUAUCAGCUCCUAA ((((((((((((.............)))))).....(((((-(.------------(((((....)))))))))))..(((((((..((((.....)))).))))))))))))).... ( -26.42) >DroEre_CAF1 81453 118 + 1 AGGCUGUGAAAAGUCUUAUCAAUUUUUCGCUUUUUAGGAUGGGCCACAUGUAGCAUUAAUGGAUGUAAUGUCUACUACAUAGUAGCUUGUUCAAUUAGUAAGCACUAUCAGCUCCUAA .(((((.(((((((.......)))))))((((.((((((..(((.((((((((......(((((.....))))))))))).)).)))..)))...))).)))).....)))))..... ( -29.80) >consensus GAGCUGGGAAAAUUCUUAUCAAAUUUUUGCUUCUUAGGAUG_GC____________AGUUGGAUGUAAUUUCAUCUAUAUAGUGUCGUGUUCAAUUAGCAAGCACUAUCAGCUCCUAA ((((((.(((((((.......)))))))...............................((((((......)))))).((((((.((((((.....)))))))))))))))))).... (-17.01 = -17.82 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:38 2006