Locus 4893

Sequence ID X_DroMel_CAF1
Location 12,722,312 – 12,722,410
Length 98
Max. P 0.500000
window7985

overview

Window 5

Location 12,722,312 – 12,722,410
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 87.45
Mean single sequence MFE -13.37
Consensus MFE -9.30
Energy contribution -9.38
Covariance contribution 0.08
Combinations/Pair 1.10
Mean z-score -1.68
Structure conservation index 0.70
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12722312 98 - 22224390
CUUGGCAUUAAUUCGAAUAAAGAAAAAAAAAAACGAAAAUCGCAAACGAAAUUAUAAGCCCAGUUGUCAAUGCCAAUAAAACGGAA-UGGCUGCCAAAA
.(((((.................................(((....))).......((((...((((.............))))..-.))))))))).. ( -13.32)
>DroSec_CAF1 74558 93 - 1
CUUGGCAUUAAUUCGAA-----AAAAAAAAAAACCAAAAUCGCAAACUAAAUUAUAAGCUCAGUAGUCAAUGCCAAUAAAAUGGAA-UGGCUGCCAAAA
.(((((...........-----...................((..............)).....(((((...(((......)))..-)))))))))).. ( -13.74)
>DroSim_CAF1 59712 91 - 1
CUUGGCAUUAAUUCAAA--------AAAAAAAACCAAAAUCGCAAACUAAAUUAUAAGCUCAGUUGUCAAUGCCAAUAAAAUGGAACUGGUUGCCAAAA
.((((((..........--------................((..............))((((((.......(((......))))))))).)))))).. ( -11.65)
>DroEre_CAF1 73888 92 - 1
CUUGGCAUUAAUUCGAA--A---AAAAAAUGAACGAAAAUCGCAAACCAAAUUAUAAAACCAGUUGUCAUUGCCAAUAAAAUGGAA-UGGUUGCCAAA-
.(((((.....((((..--.---..........))))....................(((((....(((((........)))))..-)))))))))).- ( -16.02)
>DroYak_CAF1 78250 96 - 1
CUUGGCAUUAAUUCGAA--ACGAAAAAAAAAAACCAAAAUCGCAAACUAAAUUAUAAACUCAAUUGUCAUUGCCAAUAAAAUGGAA-UAGUUGCCAAAU
.((((((...((((...--......................((((....((((........))))....))))((......)))))-)...)))))).. ( -12.10)
>consensus
CUUGGCAUUAAUUCGAA__A__AAAAAAAAAAACCAAAAUCGCAAACUAAAUUAUAAGCUCAGUUGUCAAUGCCAAUAAAAUGGAA_UGGUUGCCAAAA
.(((((((((.(((...........................(((.....((((........)))).....)))((......))))).))).)))))).. ( -9.30 =  -9.38 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:30 2006