Locus 4891

Sequence ID X_DroMel_CAF1
Location 12,715,379 – 12,715,476
Length 97
Max. P 0.858917
window7982

overview

Window 2

Location 12,715,379 – 12,715,476
Length 97
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 79.89
Mean single sequence MFE -14.79
Consensus MFE -9.80
Energy contribution -10.55
Covariance contribution 0.75
Combinations/Pair 1.20
Mean z-score -1.98
Structure conservation index 0.66
SVM decision value 0.82
SVM RNA-class probability 0.858917
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12715379 97 + 22224390
AAAACGACAAAAAAAAAAAAACACAUACUGCUUGUGAGCCA-ACAAUUUCACCAGUGGCAUACAAAGGGGAAAUCCCUCCGAAAACUUUCUAUAUAAA
....((.....................(..((.(((((...-.....))))).))..)........((((....)))).))................. ( -14.10)
>DroSec_CAF1 67496 93 + 1
AAAACGAAAAAGA----AAAAAACCUACUGCUUGUGAGCCAAACAAUUUCACCAGUGGCAUACA-AGGGGAAAUCCCUCGGAAAACUUUCUAAAUAAA
..........(((----((....((.....((((((.((((..............)))).))))-))(((....)))..)).....)))))....... ( -18.64)
>DroEre_CAF1 67486 83 + 1
AAAACGAAAAA------------G-UACUGUAUGUGAGCCA-ACAAUUUCAUCAGUAGUAUAAA-GGGGGAAAUCCCUCAGAAAAGUUUCUAAAUAAA
.....((((..------------(-(((((...(((((...-.....)))))...))))))...-(((((....))))).......))))........ ( -16.40)
>DroYak_CAF1 71993 84 + 1
AAAACGAAAAA------------UUUACUGCAUGUGAGCCA-AAAAUUUCACCAGUGGUAUAAA-AGUGGAAAUCCCUCAGAGAACUUUUUAAAUAAA
...........------------..(((..(..(((((...-.....)))))..)..))).(((-(((.((......)).....))))))........ ( -10.00)
>consensus
AAAACGAAAAA____________C_UACUGCAUGUGAGCCA_ACAAUUUCACCAGUGGCAUAAA_AGGGGAAAUCCCUCAGAAAACUUUCUAAAUAAA
.....((((................(((((((.(((((.........))))).)))))))......((((....))))........))))........ ( -9.80 = -10.55 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:28 2006