Locus 4888

Sequence ID X_DroMel_CAF1
Location 12,705,376 – 12,705,472
Length 96
Max. P 0.826058
window7979

overview

Window 9

Location 12,705,376 – 12,705,472
Length 96
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 76.31
Mean single sequence MFE -11.96
Consensus MFE -9.32
Energy contribution -8.88
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -1.37
Structure conservation index 0.78
SVM decision value 0.70
SVM RNA-class probability 0.826058
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12705376 96 - 22224390
CAAUGUAUAAA-AAAGAAUGAACAUAUUCAUUU---AACAACAACAGGCCAACUUGCCAAAUUUAAUGUGAAAAACAUGCGAAGGC-AGUGGAAAAUCCU-C
...........-...(((((((....)))))))---............(((...((((.......((((.....)))).....)))-).)))........-. ( -14.10)
>DroSec_CAF1 58042 86 - 1
CAAUGUAUAAAAAAAGAACGAAAUUAUUCGUUUGAUAACAACAACAAGACAACUUAACAAA----------------UGCGAAAGCUUAUGGUAAAUCCUCC
...(((.........(((((((....)))))))..........)))...........((..----------------.((....))...))........... ( -10.61)
>DroSim_CAF1 44544 83 - 1
CAAUGUAUAAA-AAAGAACGAAAUUAUUCGUUUGAUAACAACAACAAGACAACUUAACAAA----------------UGCGAAAGC-UAUGGAAAAUCCU-C
...(((.....-...(((((((....))))))).......)))..................----------------.((....))-...((.....)).-. ( -11.16)
>consensus
CAAUGUAUAAA_AAAGAACGAAAUUAUUCGUUUGAUAACAACAACAAGACAACUUAACAAA________________UGCGAAAGC_UAUGGAAAAUCCU_C
...(((.........(((((((....)))))))..........)))................................((....))....((.....))... ( -9.32 =  -8.88 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:25 2006