Locus 4886

Sequence ID X_DroMel_CAF1
Location 12,700,711 – 12,700,812
Length 101
Max. P 0.605414
window7974

overview

Window 4

Location 12,700,711 – 12,700,812
Length 101
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 81.48
Mean single sequence MFE -20.70
Consensus MFE -10.82
Energy contribution -11.72
Covariance contribution 0.89
Combinations/Pair 1.08
Mean z-score -2.96
Structure conservation index 0.52
SVM decision value 0.15
SVM RNA-class probability 0.605414
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12700711 101 + 22224390
GAUUACACAUAUUAGACGCUUUUUAGAAACGAGUUACACUUUUUUACCAAAAAGAGCAGUCCACUAAA-UACUAAAGUUUUUAAGUUUGCUGAUUAUGUGAU
.....((((((((((.((...(((((((((.(((....(((((((....))))))).((....))...-.)))...)))))))))..)))))).)))))).. ( -18.50)
>DroSec_CAF1 53475 93 + 1
CAUAACACAUAUUAGAAACUUUUCGGAAACGAGUUACACUUCUUUACA---------AGUGUAAUAAAUUACUAAAAUAUUUAAGUUUGCUGAUUGUGUAAU
....(((((.(((((((((((.(((....)))(((((((((......)---------)))))))).................)))))).))))))))))... ( -25.90)
>DroSim_CAF1 39743 93 + 1
CAUAACACAUAUUAGAAACUUUUCAGAAACGAGUUACACUACUUUACA---------AGUGUACUAAAGUACUAAAAUAUUUAAGUUUGCUAAUUGUGUAAU
....(((((.(((((((((((..........(((.(((((........---------)))))))).(((((......))))))))))).))))))))))... ( -17.70)
>consensus
CAUAACACAUAUUAGAAACUUUUCAGAAACGAGUUACACUUCUUUACA_________AGUGUACUAAA_UACUAAAAUAUUUAAGUUUGCUGAUUGUGUAAU
....(((((.(((((((((((..........(((((((((.................)))))).......))).........)))))).))))))))))... (-10.82 = -11.72 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:21 2006