Locus 4879

Sequence ID X_DroMel_CAF1
Location 12,692,330 – 12,692,444
Length 114
Max. P 0.828579
window7964

overview

Window 4

Location 12,692,330 – 12,692,444
Length 114
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 94.39
Mean single sequence MFE -21.82
Consensus MFE -19.30
Energy contribution -19.94
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.38
Structure conservation index 0.88
SVM decision value 0.71
SVM RNA-class probability 0.828579
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12692330 114 - 22224390
UAUUGAGAUUUAUUGUCUCAUCGCUCUAAUUACAAUAAGGCAGUGCCUACCACUGUGCGUCGCAAUGUCGCCAUUCUUAUUCCAUUCUCAAUUUCGAAGCCC--ACUCCUGAGCCC
...((((((.....))))))..((((.......((((((((((((.....))))))(((.(.....).)))....))))))...(((........)))....--......)))).. ( -23.70)
>DroSec_CAF1 45383 116 - 1
UAUUGAGAUUUAUUGUCUCAUCGCUCUAAUUACAAUAAGGCAGUGCCUACCACUGUGCGUCGCAAUGUCGCCAUUCUUAUUCCAUUCUCAAUUUCGAAGCCCGCACUCCUGAGCCC
...((((((.....))))))..((((...........((((...))))......(((((..((((((....)))).........(((........))))).)))))....)))).. ( -24.30)
>DroSim_CAF1 31414 116 - 1
UAUUGAGAUUUAUUGUCUCAUCGCUCUAAUUACAAUAAGGCAGUGCCUACCACUGUGCGUCGCAAUGUCGCCAUUCUUAUUCCAUUCUCAAUUUCGAAGCCCACACUCCUGAGUCC
...((((((.....))))))..((((.......((((((((((((.....))))))(((.(.....).)))....))))))...(((........)))............)))).. ( -21.60)
>DroEre_CAF1 44571 114 - 1
UAUUGAGAUUUAUUGUCUCAUCGCUCUAAUUACAAUAAGGCAGUGCCUACCACUGUGCGUCGCAAUGUCGCCAUCCUUAUUCCAUUCUCGAUUUCGAACC--CCACUCCUGAUCCC
...((((((.....)))))).............((((((((((((.....))))))(((.(.....).)))....))))))......(((....)))...--.............. ( -20.30)
>DroYak_CAF1 48893 115 - 1
UAUUGAGAUUUAUUGUCUCAUCGCUCUAAUUACAAUAAGGCAGUGCCUACCACUGUGCGUCGCCAUGUCGCCAUCCUUAUUCCAAUCUCAAUUUCAAACC-CCCAUUCCUGAUCCC
.(((((((((....((......)).........((((((((((((.....))))))(((.(.....).)))....))))))..)))))))))........-............... ( -19.20)
>consensus
UAUUGAGAUUUAUUGUCUCAUCGCUCUAAUUACAAUAAGGCAGUGCCUACCACUGUGCGUCGCAAUGUCGCCAUUCUUAUUCCAUUCUCAAUUUCGAAGCCCCCACUCCUGAGCCC
...((((((.....))))))..((((.......((((((((((((.....))))))(((.(.....).)))....))))))...(((........)))............)))).. (-19.30 = -19.94 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:12 2006