Locus 4877

Sequence ID X_DroMel_CAF1
Location 12,691,150 – 12,691,258
Length 108
Max. P 0.706389
window7962

overview

Window 2

Location 12,691,150 – 12,691,258
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 69.96
Mean single sequence MFE -37.29
Consensus MFE -18.00
Energy contribution -18.04
Covariance contribution 0.04
Combinations/Pair 1.54
Mean z-score -1.72
Structure conservation index 0.48
SVM decision value 0.36
SVM RNA-class probability 0.706389
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12691150 108 + 22224390
ACUUUGUUAGCGGCACGAU------------CCUUCUCUGUGGCACCCGGACUUGCCUCCUUUAUGGGCUUUUGCAGCUGAAAAUUGGUGCUGCAAAAGCUAUUGGUGGCUUUCAACAGC
...(((((.((.(((.((.------------.....))))).))....(((...(((.((......((((((((((((...........))))))))))))...)).))).)))))))). ( -36.80)
>DroSec_CAF1 44180 104 + 1
----UGCUAGCGGCAGGAU------------CCUCCUCUGGGUCAGGCGGUAUUGCCUCCUUUAUUGGUUUUUGCAGCCGGAAAUCUGCGCUGCAAAAGCUAUCGGUGGCUUUCAAUAGC
----.((((((.((..(((------------((......)))))..)).))...(((.((.....((((((((((((((((....))).)))))))))))))..)).)))......)))) ( -45.80)
>DroSim_CAF1 30229 104 + 1
----UGCUAGCGGCAGGAU------------CCUUCUCUGGGUCAGCCGGAAUUGCCUCUUUUAUUGGUUUUUGCAGCCGGAAAUCGGCGCUGCAAAAGCUAUCGUUGGCUUUCAAUAGC
----.((((.((((..(((------------((......))))).))))(((..(((........((((((((((((((.(....).).))))))))))))).....))).)))..)))) ( -42.52)
>DroEre_CAF1 43452 114 + 1
AGAUUGUCCGCGGAAUGAUCCCGAU------CCUCCUCUGGGGCAGCCGGACUCGAAGCAUUUAUUGGUAUUUGCAAGCGGUUUUUGGUGCUGCAGCAGCAACUGAUGGAUUUCAUCACC
.(((.(((((.(...((.((((((.------.....)).)))))).))))))..(((..((((((..((..((((..(((((.......))))).))))..))..))))))))))))... ( -31.30)
>DroYak_CAF1 47753 120 + 1
AGAUUGUCGGUGGUAUGAUCCCCAUUCACUUCCUUUUUUGGAGCAACCGGACUUGCCACCUUGAUGGGUUUUUGCAAACGGGAAUUGGCGUUGCUGUAACUACUGGUGGGUUUCAUCAGC
........(((((((.(.(((........((((......)))).....)))).)))))))......((((...((((.((........))))))...)))).((((((.....)))))). ( -30.02)
>consensus
A__UUGUUAGCGGCAGGAU____________CCUUCUCUGGGGCAGCCGGACUUGCCUCCUUUAUUGGUUUUUGCAGCCGGAAAUUGGCGCUGCAAAAGCUAUUGGUGGCUUUCAACAGC
.....((((.(((.......................(((((.....)))))...............(((((((((((((.(....).).)))))))))))).))).)))).......... (-18.00 = -18.04 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:10 2006