Locus 4874

Sequence ID X_DroMel_CAF1
Location 12,678,063 – 12,678,165
Length 102
Max. P 0.596155
window7958

overview

Window 8

Location 12,678,063 – 12,678,165
Length 102
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 75.39
Mean single sequence MFE -23.98
Consensus MFE -6.15
Energy contribution -7.80
Covariance contribution 1.65
Combinations/Pair 1.16
Mean z-score -1.69
Structure conservation index 0.26
SVM decision value 0.13
SVM RNA-class probability 0.596155
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12678063 102 + 22224390
ACCA-AAUCCCCGCUAAAAAA-UGCAUUGUUCGCUAUUAGCGAGAAAAUAAUCGCAGGCGAA----CUGGCUGUACGUCUAAGCGUAUUAA-GCAUUAUGCUAUAUGGC
....-.......((((.....-.((((.(((((((....((((........)))).))))))----)..(((((((((....))))))..)-))...))))....)))) ( -27.20)
>DroSim_CAF1 14464 104 + 1
ACCA-AAUCCCCGCUAAAAAA-UGCAUUGUUCGCUAUUAGCG--GAAAUAAUCGCAGGCGAACUAACUGGCUGGAUGUCUAAGCGUAUAAA-GCAUUAUGCUAUAUGGC
.(((-.((((((((.......-.))...(((((((....(((--(......)))).))))))).....))..)))).....((((((....-....))))))...))). ( -26.90)
>DroEre_CAF1 30677 87 + 1
ACCA-AAUCCCCGCUAAAAAAGUGCAUUGUUCGCUAUUAGCG--GAAAUAAUCGG------------------UACGUAUAAACGUAUAAA-GCAUUAUGGUUUAUAGC
(((.-.....(((((((...((((.......)))).))))))--)..((((((.(------------------(((((....))))))...-).))))))))....... ( -20.20)
>DroYak_CAF1 34728 101 + 1
ACCA-AAUCCCCGCUAAAAAA-UGCAUUGUUCGCUAUUAGCG--GAAAUAAUCGGAGGCGAA----CUGGCUGUGCGUAUAAACGUAUAAGGGCAUUAUGGUAUAUGGC
((((-(((.(((.........-.((...(((((((.....(.--((.....)).).))))))----)..))(((((((....))))))).))).))).))))....... ( -27.90)
>DroAna_CAF1 38309 81 + 1
ACCAAAAUCCCCGCUAAAAAA-UGCAUUGUUCGCUAUUAGCG--GAAAUAAACGGAGGCCAG----AGAGCUCAACG---------------------AGGUAGAUGGC
.......((((((((((....-.((.......))..))))))--)........))).((((.----..(.(((...)---------------------)).)...)))) ( -17.70)
>consensus
ACCA_AAUCCCCGCUAAAAAA_UGCAUUGUUCGCUAUUAGCG__GAAAUAAUCGGAGGCGAA____CUGGCUGUACGUAUAAACGUAUAAA_GCAUUAUGGUAUAUGGC
.(((....((.((((((......((.......))..))))))..............................((((((....))))))...........))....))). ( -6.15 =  -7.80 +   1.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:06 2006