| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,668,385 – 12,668,492 |
| Length | 107 |
| Max. P | 0.608870 |
| Location | 12,668,385 – 12,668,492 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 80.43 |
| Mean single sequence MFE | -39.26 |
| Consensus MFE | -20.26 |
| Energy contribution | -21.22 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12668385 107 + 22224390 CGUGUGCAACUGCCACAAUGAGCGGCCGAGACAAAGGGCUGCAACAUGGCAGUGCCG-CUGC-CGGGACAGAGAUGUCCUGGCAAGAAGGCAAGAAUUUCAGCAAGUAC ....(((.(((((((......((((((.........))))))....)))))))(((.-.(((-(((((((....))))))))))....)))..........)))..... ( -47.20) >DroPse_CAF1 29694 102 + 1 CGUGUGCAACUUCCACAAUGGUGCACAGAGACAAAAGACUGCAACAUACCGGUGGCU-UUGGCUGUGGCAGUG---UCAGUGC--CAAUGGAAG-CAGCUCCUUCGAAC ((.(.((..((((((...(((..(.....(((.....(((((..((((((((.....-)))).))))))))))---)).)..)--)).))))))-..)).)...))... ( -27.80) >DroSec_CAF1 22239 107 + 1 CGUGUGCAACUGCCACAAUGCGCCGCCGAGACAAAGGGCUGCAACAUGGCAGUGCCG-UUGC-CGGGACAGAGAUGUCCUGGCAAGAAGGCAAGAAUUCCAGCAAGUAC ....(((.(((((((...((((((............))).)))...)))))))(((.-((((-(((((((....)))))))))))...)))..........)))..... ( -46.10) >DroEre_CAF1 21447 107 + 1 CGUGUGCAACUUCCACAAUGCGCCGCCGAGACAAAGGGCUGCAACAUGGCAGUGCGG-UUGC-CGGUGCAGCGAUGUUGCGGCAAGAAGGCAAGAAUUCCAGCAAGUAC ..((((.......)))).((((((.((........))((((((((((.((.(..(.(-....-).)..).)).)))))))))).....)))..(.....).)))..... ( -35.70) >DroYak_CAF1 25299 108 + 1 CGUGUGCAACUUCCACAAUGCGCCGCCGAGACAAAGGGCUGCAACAUGGCAGUGCCGUUUGC-CGGGACAGAGAUGUCCUGGCAUGAAGGCAAGAAUUCCAGCAAGUAC ..((((.......)))).(((((.(((.........))).))....(((...((((...(((-(((((((....))))))))))....))))......))))))..... ( -39.50) >consensus CGUGUGCAACUUCCACAAUGCGCCGCCGAGACAAAGGGCUGCAACAUGGCAGUGCCG_UUGC_CGGGACAGAGAUGUCCUGGCAAGAAGGCAAGAAUUCCAGCAAGUAC ..((((.......)))).......(((........(.(((((......))))).)....(((.(((((((....))))))))))....))).................. (-20.26 = -21.22 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:01 2006