Locus 4869

Sequence ID X_DroMel_CAF1
Location 12,665,547 – 12,665,644
Length 97
Max. P 0.842670
window7948 window7949

overview

Window 8

Location 12,665,547 – 12,665,644
Length 97
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 95.27
Mean single sequence MFE -26.57
Consensus MFE -23.59
Energy contribution -23.70
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.18
Structure conservation index 0.89
SVM decision value 0.56
SVM RNA-class probability 0.781850
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12665547 97 + 22224390
CUGCUGCAGCCGCUGUCUUGGUACAUUUAUAAGCAACCCUUGCUAACCGGUUUCUUCGACUCUGUGUUUCCUU--UUUCGGCUGCUGCUGCACUUGAUU
.(((.(((((.((((....((.((((.....((((.....))))...(((.....))).....))))..))..--...)))).))))).)))....... ( -27.00)
>DroEre_CAF1 19418 98 + 1
CUGCUGCAGCCGCUGUCUUGGUACAUUUAUAAGCAACCCUUGCUAACUGGUUUGCUCGACUCUGGGUUUCCUUU-UUUCGGCUGCUGCUGCACUUGAUU
.(((.(((((.((((................((((.....))))....((...(((((....)))))..))...-...)))).))))).)))....... ( -26.90)
>DroYak_CAF1 22288 99 + 1
CUGCUGCAGCCGCUGUCCUGGUACAUUUAUAAGCAACCCUUGCUAACCGGUUUCUUCGACUCUGUGUUUCCUUUUUUUCGGCUGCUGCUGCACUUGAUU
.(((.(((((.((((....((.((((.....((((.....))))...(((.....))).....))))..)).......)))).))))).)))....... ( -25.80)
>consensus
CUGCUGCAGCCGCUGUCUUGGUACAUUUAUAAGCAACCCUUGCUAACCGGUUUCUUCGACUCUGUGUUUCCUUU_UUUCGGCUGCUGCUGCACUUGAUU
.(((.(((((.((((....((.((((.....((((.....))))...(((.....))).....))))..)).......)))).))))).)))....... (-23.59 = -23.70 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 12,665,547 – 12,665,644
Length 97
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 95.27
Mean single sequence MFE -25.90
Consensus MFE -24.46
Energy contribution -24.46
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.94
SVM decision value 0.76
SVM RNA-class probability 0.842670
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12665547 97 - 22224390
AAUCAAGUGCAGCAGCAGCCGAAA--AAGGAAACACAGAGUCGAAGAAACCGGUUAGCAAGGGUUGCUUAUAAAUGUACCAAGACAGCGGCUGCAGCAG
...........((.(((((((...--..(....).....(((..........((.((((.....)))).))...........)))..))))))).)).. ( -25.40)
>DroEre_CAF1 19418 98 - 1
AAUCAAGUGCAGCAGCAGCCGAAA-AAAGGAAACCCAGAGUCGAGCAAACCAGUUAGCAAGGGUUGCUUAUAAAUGUACCAAGACAGCGGCUGCAGCAG
...........((.(((((((...-...((....))...(((((((((.((.........)).)))))).....((...)).)))..))))))).)).. ( -27.10)
>DroYak_CAF1 22288 99 - 1
AAUCAAGUGCAGCAGCAGCCGAAAAAAAGGAAACACAGAGUCGAAGAAACCGGUUAGCAAGGGUUGCUUAUAAAUGUACCAGGACAGCGGCUGCAGCAG
...........((.(((((((.......(....)(((......(((.((((..........)))).))).....)))..........))))))).)).. ( -25.20)
>consensus
AAUCAAGUGCAGCAGCAGCCGAAA_AAAGGAAACACAGAGUCGAAGAAACCGGUUAGCAAGGGUUGCUUAUAAAUGUACCAAGACAGCGGCUGCAGCAG
...........((.(((((((.......(....).....(((.............((((.....))))..............)))..))))))).)).. (-24.46 = -24.46 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:58 2006