| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,663,196 – 12,663,308 |
| Length | 112 |
| Max. P | 0.546045 |
| Location | 12,663,196 – 12,663,308 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 82.02 |
| Mean single sequence MFE | -20.12 |
| Consensus MFE | -11.53 |
| Energy contribution | -12.08 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.546045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12663196 112 + 22224390 UUUUUCCAUUCCAUUGUAGUUGGAUUUAAAUUUGUCCAUUUGAUUCCAAC-CCAUUGUUGCAUUUGCUCAUGCCUCAUUUGAGGCGAUUACACACGACACAA-AAAAAAAAAAA .............((((.((((((.((((((......)))))).))))))-.....(((((....))...((((((....)))))).........)))))))-........... ( -23.60) >DroPse_CAF1 24617 101 + 1 UUUUUCCAUUUCAUUGUAGUUACUUUCGAA-UCAUCCAUUC-AUGC--AC-CCAUUGCUG---UUGCUCAUGCCUCAUUUGAGGCGAUUACACACAACAACAAGCACAG----- .............((((.(((.......((-((........-..((--(.-....)))..---........(((((....)))))))))......))).))))......----- ( -16.42) >DroEre_CAF1 17018 107 + 1 UUUUUCCAUUCCAUUGUAGUUGGAUUUAAAUUUGUCCAUUUGAUUCCAAC-CCAUUGUUGCAUUUGCUCAUGCCUCAUUUGAGGCUAUUACACACAACACAA-AAAAAG----- .............((((.((((((.((((((......)))))).))))))-.....((((....((.....(((((....))))).....))..))))))))-......----- ( -23.20) >DroYak_CAF1 19909 107 + 1 UUUUUCCAUUCCAUUGUAGUUGGAUUUAAAUUUGUCCAUUUGAAUCCAAC-CCAUUGUUGCAUUUGCUCAUGCCUCAUUUGAGUCGAUUACACACAACACAA-GAACGA----- .............((((.(((((((((((((......)))))))))))))-...((((((...(((((((.........)))).)))...)).)))).))))-......----- ( -21.80) >DroAna_CAF1 21232 113 + 1 UUUUUCCAUUCCAUUGUAGUUGCAUUUAAAUUUGUCCAUUUGAUUCCAUCCCCAUUGUUGCAUUUUCUCAUGCCUCAUUUGAGGCGAUUACACACAACAGCA-CAACACAACAC .............((((.((((...((((((......))))))...........((((((..........((((((....))))))........))))))..-))))))))... ( -17.67) >DroPer_CAF1 29163 101 + 1 UUUUUCCAUUUCAUUGUAGUUACUUUCGAA-UCAUCCAUUC-AUGC--AC-CCAUUGCUG---UUGAUCAUGCCUCAUUUGAGGCGAUUACACACAACAACAAGCACAG----- .............((((.(((.......((-((......((-(.((--(.-....)))..---.)))....(((((....)))))))))......))).))))......----- ( -18.02) >consensus UUUUUCCAUUCCAUUGUAGUUGCAUUUAAAUUUGUCCAUUUGAUUCCAAC_CCAUUGUUGCAUUUGCUCAUGCCUCAUUUGAGGCGAUUACACACAACACAA_GAACAG_____ ..............(((((((....((((((......))))))............................(((((....))))))))))))...................... (-11.53 = -12.08 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:51 2006