| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,659,620 – 12,659,712 |
| Length | 92 |
| Max. P | 0.500000 |
| Location | 12,659,620 – 12,659,712 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 87.00 |
| Mean single sequence MFE | -16.77 |
| Consensus MFE | -13.26 |
| Energy contribution | -13.07 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.79 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12659620 92 - 22224390 GAGCAAUAUACAUGCUUCAGCCAAGUCGAUUGACUUUAAAUGCCAUCAAUCAUGGUACAAUUUGAUUUGAGCUU--UCCCCUGAUUAGAUCCAA (((((.......))))).((((((((((((((........((((((.....))))))))).)))))))).))).--.................. ( -17.50) >DroSec_CAF1 13359 88 - 1 G----AUAUACAUGCUACAGCCAAGUCGAUUGACUUUAAAUGCCAUCAAUCAUGGCACAAUUCGAUUUGAGCUU--UCCCCUGAGUAGAUCCAA .----.........((((((((((((((((((........((((((.....))))))))).)))))))).))).--((....))))))...... ( -21.00) >DroEre_CAF1 13581 88 - 1 G----AUGUACAUAUAUCAGCCAAAUCAAUUGACUUUAAAUACCAUCAAUCAUGGCACAAUUUGAUUUGAGCUU--UCCCCUGAUUAGAUCCAA (----((((....)))))((((((((((((((..........((((.....))))..))).)))))))).))).--.................. ( -13.40) >DroYak_CAF1 16221 90 - 1 G----AUAUACAUAUCUAAGUGAAGUAGAUUGACUUUAAAUGCCAUCAAUCAUGGCACAAUUCGAUUUGAGCUCUCUCCCCUGAUUAGAUCCAA .----........((((((....((..((..((.((((((((((((.....))))))........)))))).))..))..))..)))))).... ( -15.20) >consensus G____AUAUACAUACUUCAGCCAAGUCGAUUGACUUUAAAUGCCAUCAAUCAUGGCACAAUUCGAUUUGAGCUU__UCCCCUGAUUAGAUCCAA ..................((((((((((((((........((((((.....))))))))).)))))))).)))..................... (-13.26 = -13.07 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:50 2006