Locus 4864

Sequence ID X_DroMel_CAF1
Location 12,653,309 – 12,653,428
Length 119
Max. P 0.542991
window7943

overview

Window 3

Location 12,653,309 – 12,653,428
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 95.38
Mean single sequence MFE -34.64
Consensus MFE -29.50
Energy contribution -30.50
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.85
SVM decision value 0.02
SVM RNA-class probability 0.542991
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12653309 119 + 22224390
GUAGAGCAUUGUAGGCGAUUUAUCGGGUAAUUGGGGACAGGUCAAGCUCGAAUGUGUUCUAAAUGGAAAAUGGGCGGGUCACUAGAUGGGGUCGCUUCAUAUUAAACAAGGCGCUCGCU
...((((.((((((((((((((((.(((..(((....))).....(((((..(((.((((....)))).)))..))))).))).))).)))))))))........))))...))))... ( -31.80)
>DroSec_CAF1 6909 116 + 1
G--GAGCAUUGUAGGCGAUUUAUCGGGUAAUUGGGGACAGGUCAAGCUCGAAUGUGUUCUAAAUGGAAAAUGGGCGGGACACUAGAUGG-GUCGCUUCACAUUAAACAAGGCGCUCGCU
.--((((.((((((((((((((((.(((..(((....)))(((..(((((......((((....))))..)))))..)))))).)))))-)))))))........))))...))))... ( -37.90)
>DroSim_CAF1 9007 116 + 1
G--GAGCAUUGUAGGCGAUUUAUCGGGUAAUUGGGGACAGGUCAAGCUCGAAUGUGUUCUAAAUGGAAAAUGGGCGGGACACUAGAUGG-GUCGCUUCACAUUAAACAAGGCGCUCGCU
.--((((.((((((((((((((((.(((..(((....)))(((..(((((......((((....))))..)))))..)))))).)))))-)))))))........))))...))))... ( -37.90)
>DroEre_CAF1 7125 112 + 1
G--GAGCAUUGUAGGCGAUUUAUCGGGUAAUUGGGGACAGGUCAAGCUCGAAUGUGUUCUAAAUGGAAAAUGGGCGGGUCACUAGAUGG-GUCGCUUCACAUUAAACAAGGCGCU----
.--..((.((((((((((((((((.(((..(((....))).....(((((..(((.((((....)))).)))..))))).))).)))))-)))))))........)))).))...---- ( -32.30)
>DroYak_CAF1 9760 112 + 1
G--GAGCAUUGUAGGCGAUUUAUCGGGUAAUUGGGGACAGGUCAAGCUCGAAUGUGUUCUAAAUGGAAAAUGGGCGGGACACUGGAUGG-UUCGCUUCACAUUAAACAAGGCGCU----
.--..((.((((((((((.(((((.(((..(((....)))(((..(((((......((((....))))..)))))..)))))).)))))-.))))))........)))).))...---- ( -33.30)
>consensus
G__GAGCAUUGUAGGCGAUUUAUCGGGUAAUUGGGGACAGGUCAAGCUCGAAUGUGUUCUAAAUGGAAAAUGGGCGGGACACUAGAUGG_GUCGCUUCACAUUAAACAAGGCGCUCGCU
...((((.((((((((((((((((.(((..(((....)))(((..(((((......((((....))))..)))))..)))))).))))).)))))))........))))...))))... (-29.50 = -30.50 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:49 2006