| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,640,902 – 12,640,995 |
| Length | 93 |
| Max. P | 0.558374 |
| Location | 12,640,902 – 12,640,995 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 68.87 |
| Mean single sequence MFE | -17.50 |
| Consensus MFE | -7.52 |
| Energy contribution | -7.55 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12640902 93 - 22224390 AAUUUGCAAAUAUA--CAUACUAUAUAUACAUAC-UG--UA------------UGCGAUAUC---AUUUGCAGAUAUAAUGACAUCUCACCGCUGGAGAAUCACCAUUGUUCG .(((((((((((((--(((((..(((....))).-.)--))------------))...))).---))))))))))((((((...((((.......)))).....))))))... ( -17.80) >DroSec_CAF1 67 108 - 1 GAUUUGCAAAUAUAUACAUACUGUAUACAUAUAGAUA--UAUCUCAUUGACAUUGCGAUAUC---AUUUGCAGAUACAAUGACAUCUCACCGCUGGAGAACCACCAUUGUUCG .((((((((((.(((((.....))))).........(--((((.((.......)).))))).---))))))))))((((((...((((.......)))).....))))))... ( -22.00) >DroSim_CAF1 133 110 - 1 GAUUUGCAAAUAUAUACACACUGUAUACAUAUAGAUAUAUAUCUCAUUGACAUUGCGAUAUC---AUUUGCAGAUACAAUGACAUCUCACCGCUGGAGAACCACCAUUGUUCG .((((((((((.(((((.....)))))...........(((((.((.......)).))))).---))))))))))((((((...((((.......)))).....))))))... ( -22.00) >DroEre_CAF1 67 83 - 1 AGUCAGCAAAUAUAUAUCAAA--UAUAUAUGU-------------------------ACAUC---ACUUGCAGAUACAAUGACAUCUCACCGCUGGAGAACCACCACUGUUCG ..(((((..((((((((....--.))))))))-------------------------.....---...((.((((........))))))..))))).((((.......)))). ( -13.70) >DroYak_CAF1 131 85 - 1 GAUUUGUGAAUAUAUAUAUAA---CUACAUGA-------------------------AUAUCUUUAUUUGCAGAUACAAUGACAUCUCACCGCUGGAGAACCACCAUUGUUCG .(((((..((((...((((..---........-------------------------))))...))))..)))))((((((...((((.......)))).....))))))... ( -14.30) >DroAna_CAF1 67 84 - 1 ACCUCUCAGAUAUGUAUCUCA--UAGAUAAA--------------------AUUGUCAUCCC-------AAAGAUACAAUGACAUCUCACCGCUGGAGAAUCAUCAUUGUUCG ........((((..((((...--..))))..--------------------..)))).....-------...((.(((((((..((((.......))))....))))))))). ( -15.20) >consensus AAUUUGCAAAUAUAUACAUAA__UAUACAUAU_____________________UGCGAUAUC___AUUUGCAGAUACAAUGACAUCUCACCGCUGGAGAACCACCAUUGUUCG ........................................................................((.((((((...((((.......)))).....)))))))). ( -7.52 = -7.55 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:43 2006