| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,638,051 – 12,638,147 |
| Length | 96 |
| Max. P | 0.531418 |
| Location | 12,638,051 – 12,638,147 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 79.39 |
| Mean single sequence MFE | -19.14 |
| Consensus MFE | -10.20 |
| Energy contribution | -10.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.53 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531418 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12638051 96 + 22224390 UAAAGAAUCAUCCCAACCAUAUGCAACGAAAUG--GGGGAAAAAAAUAUAAUUCAAAAUA-------UUUGGCAGGUGGUCAAAUAUUUGCCAUUAAUGCUUUGA ..........((((..((((..........)))--)))))............(((((.((-------(((((((((((......)))))))))..)))).))))) ( -20.70) >DroSec_CAF1 16358 105 + 1 UAAAGAAUCAGCCCAACCAUAUGCAACAAAAUGUAAGGUAAAAAAAUAUAAUUCAAAAUACGGCGAAUUUGGCAGGUGGUCAAAUAUUUGCCAUUAUUACUUUGA (((((.....(((..(((...((((......)))).))).......(((........))).))).....(((((((((......)))))))))......))))). ( -18.20) >DroEre_CAF1 15904 100 + 1 UAAAGAAUAAGCCCCACAAUAUGCAACAAAAUG--GG---AAAACAAAUAAAUCAAAGUACAAAGCAUUUGGCAGGUGGUCAAAUAUUUGCCAUUAUUGCUUUGC ............((((...............))--))---....................(((((((..(((((((((......)))))))))....))))))). ( -22.56) >DroYak_CAF1 6674 90 + 1 UAAAAAAUCAGCCCCACAAUAUGCAACAAA---------------AAAUAAACCGAAAUACGAAGAAUUUGGCAGGUGGUCAAAUAUUUGCCAUUAUUGCUUUGA ..............................---------------...............((((((((.(((((((((......)))))))))..))).))))). ( -15.10) >consensus UAAAGAAUCAGCCCAACAAUAUGCAACAAAAUG__GG___AAAAAAAAUAAAUCAAAAUACGAAGAAUUUGGCAGGUGGUCAAAUAUUUGCCAUUAUUGCUUUGA .....................................................................(((((((((......)))))))))............ (-10.20 = -10.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:42 2006