Locus 486

Sequence ID X_DroMel_CAF1
Location 1,413,865 – 1,413,978
Length 113
Max. P 0.627028
window749

overview

Window 9

Location 1,413,865 – 1,413,978
Length 113
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 74.56
Mean single sequence MFE -26.19
Consensus MFE -19.34
Energy contribution -19.37
Covariance contribution 0.03
Combinations/Pair 1.20
Mean z-score -0.81
Structure conservation index 0.74
SVM decision value 0.19
SVM RNA-class probability 0.627028
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1413865 113 + 22224390
GUAGUACUGCUGCUGGUCGGGAUGCGGCUUGAUGCCAAUGUAGUUGCGUGAGCAGCGAUUAUUCUACGAUU-GGAA--AUAUACAAUAGAAACAUGUGUUAAAAAGCUUAAU-GAUU
((((.....)))).(((((....(((((.....))).((((.(((((....))))).....(((((...((-(...--.....))))))))))))..........))....)-)))) ( -28.20)
>DroVir_CAF1 4318 105 + 1
AUAGUAUUGCUGCUGAUCCGGAUGCGGCUUGAUGCCCACGUAAUUUCUCGAGCAGCGAUUGUUCUUUAUAAAGGG-AAAACA-----CAAAUAAACUCUUUGAA------CUCGUUU
.....(((((((((((.....(((.(((.....)))..)))......)).))))))))).((((.....((((((-......-----........)))))))))------)...... ( -21.64)
>DroSec_CAF1 20307 108 + 1
GUAAUACUGCUGUUGGUCGGGAUGCGGCUUGAUGCCAAUGUAGUUGCGCGAGCAGCGAUUAUUCUACGAUU-GGAA--AUAU-----AGAAACAGGUGUUAAAAAGCUUAAU-AAUU
.((((((..(((((.((((((......)))))).(((((((((((((....)))))((....))))).)))-))..--....-----...)))))))))))...........-.... ( -27.30)
>DroSim_CAF1 10921 108 + 1
GUAGUACUGCUGUUGGUCGGGAUGCGGCUUGAUGCCAAUGUAGUUGCGCGAGCAGCGAUUAUUCUACGAUU-GGAA--AUAU-----AGAAACAGGUGUUAAAAAGCUUAAU-AAUU
.........(((((.((((((......)))))).(((((((((((((....)))))((....))))).)))-))..--....-----...))))).((((((.....)))))-)... ( -25.20)
>DroEre_CAF1 15710 90 + 1
GUAGUACUGCUGCUGGUCGGGAUGGGGCUUGAUGCCAAUGUAGUUGCGUGAGCAGCGAUUACUCUACAAUU-AAAA--AUAA-----CGAAUCC-------------------GAUU
((((.....)))).(((((((.(.((((.....)))..(((((((((....)))))((....))))))...-....--....-----).).)))-------------------)))) ( -26.60)
>DroYak_CAF1 11836 97 + 1
GUAGUACUGCUGCUGGUCGGGAUGGGGCUUGAUGCCAAUGUAGUUGCGUGAGCAGCGAUUGUUCUACAAUU-GGAA--AUAA-----AGAAACA-----------GCUCACU-GGUU
(((....))).((..((.(((.((...(((....(((((((((((((....)))))((....))))).)))-))..--...)-----))...))-----------.))))).-.)). ( -28.20)
>consensus
GUAGUACUGCUGCUGGUCGGGAUGCGGCUUGAUGCCAAUGUAGUUGCGCGAGCAGCGAUUAUUCUACAAUU_GGAA__AUAA_____AGAAACA_GUGUUAAAA_GCUUAAU_GAUU
((((...(((((((.(.((.(((..(((.....)))......))).))).)))))))......)))).................................................. (-19.34 = -19.37 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:45 2006